[24.1] Disable locking when opening h5 files, add missing with

[mvdbeek]

Had our NFS clients booted off the server earlier today, apparently because of a locking issue.
Don't see what we need locking for here, so 👋 👋

How to test the changes?

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• I've included appropriate automated tests.
• This is a refactoring of components with existing test coverage.
• Instructions for manual testing are as follows:
  1. [add testing steps and prerequisites here if you didn't write automated tests covering all your changes]

License

• I agree to license these and all my past contributions to the core galaxy codebase under the MIT license.

[natefoo]

Note this affects Galaxy but not jobs. I set (SINGULARITYENV_)HDF5_USE_FILE_LOCKING="FALSE" in my jobs as well, perhaps we should add that to the default template (with the ability to override) e.g.:

: ${HDF5_USE_FILE_LOCKING:="FALSE"}

?