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[22.01] Create config package, move app-related functionality to app #13461

Merged
merged 27 commits into from
Mar 2, 2022
Merged

[22.01] Create config package, move app-related functionality to app #13461

merged 27 commits into from
Mar 2, 2022

Commits on Mar 1, 2022

  1. Move app-related functions and classes to galaxy.app

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  2. Create config package

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  3. Move unit tests that requre TS schema

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  4. Fix up tests for non-UTC clocks

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  5. Fix mocking of GalaxyAppConfiguration

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  6. Package version.py

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  7. Drop _override_tempdir patch 

    and just set override_tempdir to False.
    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  8. Drop local import 

    We're already importing at the top

Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  9. Use facts directly 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  10. Debug unit tests

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  11. Drop _override_tempdir patch 

    and just set override_tempdir to False.
    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  12. Drop get_database_url helper 

    I don't see an advantage over accessing the config attribute instead.
    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  13. Move init_models_from_config to galaxy.model.mapping

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  14. Adapt project boilerplate 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  15. Drop responses test requirement from config package 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  16. Fix package symlinks

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  17. Use imports from top 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  18. Add galaxy-objectstore to app package requirement 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  19. Fix History formatting 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  20. Use black style double quotes 

    Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo committed Mar 1, 2022
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  21. Switch license back to AFL

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  22. Move more things to the top

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  23. List transitive dependencies that are imported directly in config pac… 

    …kage

Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
    @mvdbeek @nsoranzo
    mvdbeek and nsoranzo authored Mar 1, 2022
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  24. Drop pykwalify from app requirements 

    Should be redundant as it is handled by the config package requirements.
    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  25. Add pykwalify to app package test requirements

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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  26. Reformat with black and pyupgrade

    @nsoranzo
    nsoranzo authored Mar 1, 2022
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  27. Rename project_galaxy_config.py

    @mvdbeek
    mvdbeek committed Mar 1, 2022
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