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Adding ability to write GMSH mesh file #50

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merged 12 commits into from
Dec 17, 2023
Merged

Adding ability to write GMSH mesh file #50

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a0b6e69
refactor to allow mesh export
shimwell Dec 17, 2023
e99894e
added gmsh file writing test
shimwell Dec 17, 2023
1b345c3
[skip ci] Apply formatting changes
shimwell Dec 17, 2023
63f3f3a
added etra link
shimwell Dec 17, 2023
063f5b6
installing openmc from source
shimwell Dec 17, 2023
375c4f3
added path
shimwell Dec 17, 2023
dc65cb1
added init for gmsh
shimwell Dec 17, 2023
9f9b881
moved gmsh init into def
shimwell Dec 17, 2023
9ad5d84
moved downloader to afer openmc install
shimwell Dec 17, 2023
c93e2fd
corrected make command
shimwell Dec 17, 2023
3b7b45a
adding make install
shimwell Dec 17, 2023
83a3f3c
added dagmc and moab
shimwell Dec 17, 2023
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31 changes: 28 additions & 3 deletions .github/workflows/ci_with_benchmarks.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -23,7 +23,7 @@ jobs:
- name: Checkout repository
uses: actions/checkout@v4

- name: install non pypi dependencies for cad creation
- name: install dependencies and run CSG / DAMGC benchmarks
env:
OPENMC_CROSS_SECTIONS: /home/runner/work/cad_to_dagmc/cad_to_dagmc/cross_sections.xml
shell: bash
Expand All @@ -37,9 +37,34 @@ jobs:
sudo apt-get upgrade -y
sudo apt-get install -y libgl1-mesa-glx libgl1-mesa-dev libglu1-mesa-dev freeglut3-dev libosmesa6 libosmesa6-dev libgles2-mesa-dev libarchive-dev libpangocairo-1.0-0
mamba activate
mamba install -y -c cadquery -c conda-forge moab gmsh python-gmsh cadquery=master "openmc=0.13.3=dagmc*nompi*"
mamba install -y -c conda-forge "openmc=0.13.3=dagmc*nompi*"
mamba install -y -c cadquery -c conda-forge moab gmsh python-gmsh cadquery=master
python -m pip install --upgrade pip
sudo apt install g++ cmake libhdf5-dev libpng-dev
mkdir MOAB
cd MOAB
git clone --single-branch --branch 5.4.1 --depth 1 https://bitbucket.org/fathomteam/moab.git
mkdir build
cd build
cmake ../moab -DENABLE_HDF5=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_INSTALL_PREFIX=/home/runner/work/cad_to_dagmc/cad_to_dagmc/MOAB -DENABLE_FORTRAN=OFF
make
sudo make install
mkdir DAGMC
cd DAGMC
git clone --single-branch --branch v3.2.2 --depth 1 https://github.com/svalinn/DAGMC.git
mkdir build
cd build
cmake ../DAGMC -DBUILD_TALLY=ON -DMOAB_DIR=/home/runner/work/cad_to_dagmc/cad_to_dagmc/MOAB -DBUILD_STATIC_EXE=OFF -DBUILD_STATIC_LIBS=OFF -DCMAKE_INSTALL_PREFIX=/home/runner/work/cad_to_dagmc/cad_to_dagmc/DAGMC/
sudo make install
git clone --depth 1 --recurse-submodules https://github.com/openmc-dev/openmc.git openmc-repo
cd openmc-repo
mkdir build
cd build
cmake ..
make
sudo make install
cd ..
python -m pip install .
cd ..
python -m pip install cad_to_dagmc openmc_data_downloader
openmc_data_downloader -l ENDFB-7.1-NNDC -i Fe56 Be9
git clone https://github.com/fusion-energy/model_benchmark_zoo.git
Expand Down
29 changes: 26 additions & 3 deletions .github/workflows/ci_with_install.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -28,8 +28,6 @@ jobs:
- name: Checkout repository
uses: actions/checkout@v4

# - uses: conda-incubator/setup-miniconda@v2

- name: install non pypi dependencies
shell: bash
run: |
Expand All @@ -46,7 +44,32 @@ jobs:
python -m pip install --upgrade pip
python -m pip install .
python -c "import cad_to_dagmc"
mamba install -y -c conda-forge "openmc=0.13.3=dagmc*nompi*"
sudo apt install g++ cmake libhdf5-dev libpng-dev
mkdir MOAB
cd MOAB
git clone --single-branch --branch 5.4.1 --depth 1 https://bitbucket.org/fathomteam/moab.git
mkdir build
cd build
cmake ../moab -DENABLE_HDF5=ON -DBUILD_SHARED_LIBS=ON -DCMAKE_INSTALL_PREFIX=/home/runner/work/cad_to_dagmc/cad_to_dagmc/MOAB -DENABLE_FORTRAN=OFF
make
sudo make install
mkdir DAGMC
cd DAGMC
git clone --single-branch --branch v3.2.2 --depth 1 https://github.com/svalinn/DAGMC.git
mkdir build
cd build
cmake ../DAGMC -DBUILD_TALLY=ON -DMOAB_DIR=/home/runner/work/cad_to_dagmc/cad_to_dagmc/MOAB -DBUILD_STATIC_EXE=OFF -DBUILD_STATIC_LIBS=OFF -DCMAKE_INSTALL_PREFIX=/home/runner/work/cad_to_dagmc/cad_to_dagmc/DAGMC/
sudo make install
git clone --depth 1 --recurse-submodules https://github.com/openmc-dev/openmc.git openmc-repo
cd openmc-repo
mkdir build
cd build
cmake ..
make
sudo make install
cd ..
python -m pip install .
cd ..
python -m pip install .[tests]
pytest tests -v
cd examples
Expand Down
3 changes: 2 additions & 1 deletion README.md
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Original file line number Diff line number Diff line change
Expand Up @@ -59,6 +59,7 @@ You may also want to install OpenMC with DAGMC to make use of the h5m geometry f
```bash
mamba install -c conda-forge -y "openmc=0.13.3=dagmc*nompi*"
```
You could also [install OpenMC from source](https://docs.openmc.org/en/stable/quickinstall.html) which might be prefered.


# Install using Conda and pip
Expand Down Expand Up @@ -98,4 +99,4 @@ For examples see the [examples folder](https://github.com/fusion-energy/cad_to_d

# Usage - simulation with transport code

For examples see the CAD tasks in the [neutronics-workshop](https://github.com/fusion-energy/neutronics-workshop)
For examples see the CAD tasks in the [neutronics-workshop](https://github.com/fusion-energy/neutronics-workshop) and [model benchmark zoo](https://github.com/fusion-energy/model_benchmark_zoo)
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