-
-
Notifications
You must be signed in to change notification settings - Fork 67
Issues: fulcrumgenomics/fgbio
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Author
Label
Projects
Milestones
Assignee
Sort
Issues list
Make ZipperBams hanlde program name collisions
enhancement
help wanted
#1006
opened Jul 31, 2024 by
bwlang
{readname} did not have a primary R1 record. (GroupReadsByUmi)
help wanted
question
#995
opened Jun 14, 2024 by
xiechangxiao
feature request: add option to FilterBam to write filtered reads to separate file
enhancement
help wanted
#971
opened Mar 1, 2024 by
eboyden
Bug Fix - SamRecordClipper.numBasesExtendingPastMate
bug
help wanted
#937
opened Sep 20, 2023 by
JoeVieira
Loading…
Use GroupReadsByUmi for standard duplicate marking?
enhancement
help wanted
#906
opened Mar 25, 2023 by
eboyden
GroupReadsByUmi "identity" may be unnecessary?
enhancement
help wanted
#905
opened Mar 25, 2023 by
eboyden
ZipperBams error about RGID
enhancement
help wanted
question
#902
opened Feb 6, 2023 by
esamorodnitsky
feature request: switch order of operations for ClipBam
enhancement
help wanted
#878
opened Oct 9, 2022 by
eboyden
Support outputting the UMI base qualities when extracting/annotating UMIs
enhancement
help wanted
#732
opened Oct 20, 2021 by
nh13
1 of 4 tasks
Support sorting in the various Update*ContigNames tools
help wanted
#600
opened Jul 28, 2020 by
nh13
Calculate the duplication rate/Metrics for non-duplex bam files
help wanted
#571
opened Mar 16, 2020 by
angadps
Request for an optional implicit to provide Variant conversions?
enhancement
help wanted
#561
opened Jan 8, 2020 by
clintval
CorrectUmis: allow for different length UMIs
help wanted
question
#557
opened Dec 20, 2019 by
fgvieira
GroupReadsByUmi Error java.nio.file.NoSuchFileException: /dev/stdin
bug
help wanted
#528
opened Sep 11, 2019 by
Emmalynchen
Give tools metadata about the command line used
enhancement
help wanted
#439
opened Oct 26, 2018 by
nh13
Automatically generate Dagr Task from Fgbio Tool Constructors
enhancement
help wanted
#284
opened Sep 25, 2017 by
nh13
SamBuilder.addPair should support setting attributes on each end individually.
enhancement
help wanted
#244
opened Jun 6, 2017 by
nh13
Previous Next
ProTip!
Add no:assignee to see everything that’s not assigned.