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freddolino-lab

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  1. ShapeME ShapeME Public

    Algorithm to discover structural motifs informative of expression patterns

    HTML 1

  2. ipod ipod Public

    Python 1

  3. 2018_Lrp_ChIP 2018_Lrp_ChIP Public

    Code used for the analysis of Lrp ChIP-seq and RNA-seq data

    Python 3

  4. 2018_genomeProfiling 2018_genomeProfiling Public

    Codes for data analysis of project "High-resolution mapping of transcriptional propensity in the Escherichia coli chromosome".

    Python 1

  5. 2019_PRE_prediction 2019_PRE_prediction Public

  6. 2019_nocturnin 2019_nocturnin Public

    RNA-seq data analysis code for Abshire et al Nocturnin 2019.

    R

Repositories

Showing 10 of 13 repositories
  • ekdahl_ec_2025_viz Public
    freddolino-lab/ekdahl_ec_2025_viz’s past year of commit activity
    0 0 0 0 Updated Feb 26, 2025
  • guan_etal_hfq_ppk_2025 Public

    Code associated with data analysis for Guan et al., "HP-Bodies – Ancestral Condensates that Regulate RNA Turnover and Protein Translation in Bacteria"

    freddolino-lab/guan_etal_hfq_ppk_2025’s past year of commit activity
    Python 0 0 0 0 Updated Feb 25, 2025
  • ipod Public
    freddolino-lab/ipod’s past year of commit activity
    Python 1 0 8 0 Updated Jan 22, 2025
  • ShapeME Public

    Algorithm to discover structural motifs informative of expression patterns

    freddolino-lab/ShapeME’s past year of commit activity
    HTML 1 MIT 0 1 0 Updated Oct 3, 2024
  • furna Public
    freddolino-lab/furna’s past year of commit activity
    JavaScript 0 BSD-2-Clause 0 0 0 Updated Jun 16, 2024
  • 2023_CRISPR_adaptation Public
    freddolino-lab/2023_CRISPR_adaptation’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 14, 2024
  • yigi_2022 Public

    Supplementary data regarding functional characterization of E. coli YigI

    freddolino-lab/yigi_2022’s past year of commit activity
    R 0 0 0 0 Updated Jan 10, 2022
  • ipod_v1_2020 Public

    Code for processing bacterial protein occupancy data obtained using the IPOD-HR method

    freddolino-lab/ipod_v1_2020’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jul 6, 2021
  • pombe_singlemolecule_mcmc Public
    freddolino-lab/pombe_singlemolecule_mcmc’s past year of commit activity
    0 MIT 0 0 0 Updated Feb 17, 2021
  • 2019_nocturnin Public

    RNA-seq data analysis code for Abshire et al Nocturnin 2019.

    freddolino-lab/2019_nocturnin’s past year of commit activity
    R 0 0 0 0 Updated Oct 15, 2020
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