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A versatile pairwise aligner for genomic and spliced nucleotide sequences
Modular and user-friendly platform for AI-assisted rescoring of peptide identifications
Programmatic interface to Synapse services for Python
The second version of the Kraken taxonomic sequence classification system
Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem
Identifying genome-wide translated open reading frames using ribosome profiling
A package for quantifying transposable elements at a locus level for RNAseq datasets.
Monitor Memory usage of Python code
A browser automation framework and ecosystem.
Scrapy, a fast high-level web crawling & scraping framework for Python.
A package for including transposable elements in differential enrichment analysis of sequencing datasets.
Opossum is a tool to pre-process RNA-seq reads prior to variant calling.
DeepLC: Retention time prediction for (modified) peptides using Deep Learning.
MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation methods, instruments, and labeling techniques.
Pyteomics is a collection of lightweight and handy tools for Python that help to handle various sorts of proteomics data. Pyteomics provides a growing set of modules to facilitate the most common t…
A Shiny web app for mapping datasets using Seurat v4
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
Quantifying Tumor Specificity using Bayesian probabilistic modeling for drug target discovery and prioritization
Deep universal probabilistic programming with Python and PyTorch