Fractal is a framework developed at the BioVisionCenter to process bioimaging data at scale in the OME-Zarr format and prepare the images for interactive visualization.
Fractal healthcheck is a monitoring tool which helps in operating Fractal instances. Find more information about Fractal in general and the other repositories at the Fractal home page.
$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .
[...]
Successfully installed annotated-types-0.7.0 bumpver-2024.1130 click-8.1.8 colorama-0.4.6 dnspython-2.7.0 email-validator-2.2.0 fractal-healthcheck-0.0.1 idna-3.10 lexid-2021.1006 psutil-6.1.1 pydantic-2.10.4 pydantic-core-2.27.2 pyyaml-6.0.2 toml-0.10.2 typing-extensions-4.12.2
$ fractal-health
Usage: fractal-health [OPTIONS] CONFIG_FILE
Try 'fractal-health --help' for help.
Error: Missing argument 'CONFIG_FILE'.$ python -m venv venv
$ source venv/bin/activate
$ python -m pip install -e .[dev]
[...]
$ pre-commit install
[...]From the development environment:
bumpver update --patch --dry
Fractal was conceived in the Liberali Lab at the Friedrich Miescher Institute for Biomedical Research and in the Pelkmans Lab at the University of Zurich by @jluethi and @gusqgm. The Fractal project is now developed at the BioVisionCenter at the University of Zurich and the project lead is with @jluethi. The core development is done under contract by eXact lab S.r.l..
Unless otherwise specified, Fractal components are released under the BSD 3-Clause License, and copyright is with the BioVisionCenter at the University of Zurich.