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[Artifacts/Elastic] Skip partitions #2620

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merged 4 commits into from
Jul 29, 2024
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@wild-endeavor wild-endeavor commented Jul 29, 2024

Why are the changes needed?

This relates to an issue we found when using the artifact class with Elastic while also specifying partitions.

As far as I can tell, what's happening is that the kfpytorch plugin serializes, using cloud pickle, and then deserializes within the worker. Because of how cloudpickle works, this was causing an infinite recursion in the __getattr__ call of the partitions object. Basically the getattr function is called only if the field is missing from the object, but cloudpickle doesn't run the init function for the object, which leads to an infinite recursion. The added unit test fails with infinite recursion if the code change to getattr is removed. (See more background here.)

  File "/Users/ytong/go/src/github.com/flyteorg/flytekit/plugins/flytekit-kf-pytorch/flytekitplugins/kfpytorch/task.py", line 276, in spawn_helper
    fn = cloudpickle.loads(fn)
         ^^^^^^^^^^^^^^^^^^^^^
  File "/Users/ytong/go/src/github.com/flyteorg/flytekit/flytekit/core/artifact.py", line 321, in __getattr__
    if self.partitions and item in self.partitions:
       ^^^^^^^^^^^^^^^
  File "/Users/ytong/go/src/github.com/flyteorg/flytekit/flytekit/core/artifact.py", line 312, in partitions
    return self._partitions
           ^^^^^^^^^^^^^^^^
  File "/Users/ytong/go/src/github.com/flyteorg/flytekit/flytekit/core/artifact.py", line 321, in __getattr__
    if self.partitions and item in self.partitions:
       ^^^^^^^^^^^^^^^

This was hard to find because the exception was getting swallowed by Elastic somewhere. This stack trace was taken from a file which looks something like /var/folders/jx/54tww2ls58n8qtlp9k31nbd80000gp/T/torchelastic_wg0jjz6j/local_r5pr8f9n/attempt_0/0/error.json. The behavior of the pytorch plugin is such that this just hangs (at least until some timeout), rather than failing even though there is an error.json.

What changes were proposed in this pull request?

How was this patch tested?

Tested locally.

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  • I updated the documentation accordingly.
  • All new and existing tests passed.
  • All commits are signed-off.

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Signed-off-by: Yee Hing Tong <wild-endeavor@users.noreply.github.com>
Signed-off-by: Yee Hing Tong <wild-endeavor@users.noreply.github.com>
wild-endeavor and others added 2 commits July 29, 2024 14:51
Signed-off-by: Yee Hing Tong <wild-endeavor@users.noreply.github.com>
Co-authored-by: Kevin Su <pingsutw@apache.org>
@wild-endeavor wild-endeavor merged commit 3f5ba98 into master Jul 29, 2024
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@samhita-alla
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@fg91 do you know why the plugin doesn't fail immediately when there's an error.json file?

This was hard to find because the exception was getting swallowed by Elastic somewhere. This stack trace was taken from a file which looks something like /var/folders/jx/54tww2ls58n8qtlp9k31nbd80000gp/T/torchelastic_wg0jjz6j/local_r5pr8f9n/attempt_0/0/error.json. The behavior of the pytorch plugin is such that this just hangs (at least until some timeout), rather than failing even though there is an error.json.

@@ -241,7 +241,7 @@ class ElasticWorkerResult(NamedTuple):

return_value: Any
decks: List[flytekit.Deck]
om: OutputMetadata
om: Optional[OutputMetadata] = None

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Nit: Could we please add om to ElasticWorkerResult's doc string? 🙇

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fg91 commented Jul 30, 2024

@fg91 do you know why the plugin doesn't fail immediately when there's an error.json file?

I don't know unfortunately, sorry. But I can confirm that this is not the normal behavior, normally it fails immediately:

The behavior of the pytorch plugin is such that this just hangs (at least until some timeout), rather than failing even though there is an error.json.

mao3267 pushed a commit to mao3267/flytekit that referenced this pull request Aug 1, 2024
Signed-off-by: Yee Hing Tong <wild-endeavor@users.noreply.github.com>
mao3267 pushed a commit to mao3267/flytekit that referenced this pull request Aug 2, 2024
Signed-off-by: Yee Hing Tong <wild-endeavor@users.noreply.github.com>
Signed-off-by: mao3267 <chenvincent610@gmail.com>
Future-Outlier added a commit that referenced this pull request Aug 26, 2024
…class] (#2603)

* fix: set dataclass member as optional if default value is provided

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* lint

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* feat: handle nested dataclass conversion in JsonParamType

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* fix: handle errors caused by NoneType default value

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* test: add nested dataclass unit tests

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* Sagemaker dict determinism (#2597)

* truncate sagemaker agent outputs

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* fix tests and update agent output

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* lint

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* fix test

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* add idempotence token to workflow

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* fix type

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* fix mixin

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* modify output handler

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* make the dictionary deterministic

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* nit

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---------

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* refactor(core): Enhance return type extraction logic (#2598)

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* Feat: Make exception raised by external command authenticator more actionable (#2594)

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Co-authored-by: Fabio Grätz <fabiogratz@googlemail.com>
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* Fix: Properly re-raise non-grpc exceptions during refreshing of proxy-auth credentials in auth interceptor (#2591)

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Co-authored-by: Fabio Grätz <fabiogratz@googlemail.com>
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* validate idempotence token length in subsequent tasks (#2604)

* validate idempotence token length in subsequent tasks

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* remove redundant param

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* add tests

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---------

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* Add nvidia-l4 gpu accelerator (#2608)

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* eliminate redundant literal conversion for `Iterator[JSON]` type (#2602)

* eliminate redundant literal conversion for  type

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* add test

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* lint

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* add isclass check

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---------

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* [FlyteSchema] Fix numpy problems (#2619)

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* add nim plugin (#2475)

* add nim plugin

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* move nim to inference

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* import fix

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* fix port

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* add pod_template method

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* add containers

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* update

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* clean up

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* remove cloud import

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* fix extra config

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* remove decorator

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* add tests, update readme

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* add env

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* add support for lora adapter

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* minor fixes

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* add startup probe

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* increase failure threshold

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* remove ngc secret group

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* move plugin to flytekit core

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* fix docs

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* remove hf group

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* modify podtemplate import

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* fix import

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* fix ngc api key

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* fix tests

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* fix formatting

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* lint

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* docs fix

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* docs fix

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* update secrets interface

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* add secret prefix

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* fix tests

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* add urls

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* add urls

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* remove urls

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* minor modifications

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* remove secrets prefix; add failure threshold

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* add hard-coded prefix

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* add comment

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* make secrets prefix a required param

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* move nim to flytekit plugin

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* update readme

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* update readme

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* update readme

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---------

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Signed-off-by: mao3267 <chenvincent610@gmail.com>

* [Elastic/Artifacts] Pass through model card (#2575)

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* Remove pyarrow as a direct dependency (#2228)

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* Boolean flag to show local container logs to the terminal (#2521)

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Co-authored-by: Kevin Su <pingsutw@apache.org>
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* Enable Ray Fast Register (#2606)

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* [Artifacts/Elastic] Skip partitions (#2620)

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* Install flyteidl from master in plugins tests (#2621)

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Co-authored-by: Eduardo Apolinario <eapolinario@users.noreply.github.com>
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* Using ParamSpec to show underlying typehinting (#2617)

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* Support ArrayNode mapping over Launch Plans (#2480)

* set up array node

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* wip array node task wrapper

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* support function like callability

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* temp check in some progress on python func wrapper

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* only support launch plans in new array node class for now

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* add map task array node implementation wrapper

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* ArrayNode only supports LPs for now

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* support local execute for new array node implementation

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* add local execute unit tests for array node

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* set exeucution version in array node spec

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* check input types for local execute

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* remove code that is un-needed for now

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* clean up array node class

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* improve naming

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* clean up

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* utilize enum execution mode to set array node execution path

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* default execution mode to FULL_STATE for new array node class

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* support min_successes for new array node

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* add map task wrapper unit test

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* set min successes for array node map task wrapper

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* update docstrings

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* Install flyteidl from master in plugins tests

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* lint

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* clean up min success/ratio setting

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* lint

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* make array node class callable

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---------

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Signed-off-by: Eduardo Apolinario <eapolinario@users.noreply.github.com>
Co-authored-by: Eduardo Apolinario <eapolinario@users.noreply.github.com>
Signed-off-by: mao3267 <chenvincent610@gmail.com>

* Richer printing for some artifact objects (#2624)

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* ci: Add Python 3.9 to build matrix (#2622)

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* bump (#2627)

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* Added alt prefix head to FlyteFile.new_remote (#2601)

* Added alt prefix head to FlyteFile.new_remote

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* Added get_new_path method to FileAccessProvider, fixed new_remote method of FlyteFile

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* Updated tests and added new path creator to FlyteFile/Dir new_remote methods

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* Improved docstrings, fixed minor path sep bug, more descriptive naming, better test

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* Formatting

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---------

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* Feature gate for FlyteMissingReturnValueException (#2623)

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* Remove use of multiprocessing from the OAuth client (#2626)

* Remove use of multiprocessing from the OAuth client

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* Lint

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---------

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* Update codespell in precommit to version 2.3.0 (#2630)

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* Fix Snowflake Agent Bug (#2605)

* fix snowflake agent bug

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* a work version

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* Snowflake work version

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* fix secret encode

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* all works, I am so happy

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* improve additional protocol

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* fix tests

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* Fix Tests

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* update agent

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* Add snowflake test

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* nit

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* sd

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* snowflake loglinks

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* add metadata

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* secret

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* nit

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* remove table

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* add comment for get private key

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* update comments:

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* Fix Tests

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* update comments

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* update comments

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* Better Secrets

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* use union secret

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* Update Changes

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* use if not get_plugin().secret_requires_group()

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* Use Union SDK

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* Update

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* Fix Secrets

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* Fix Secrets

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* remove pacakge.json

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* lint

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* add snowflake-connector-python

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* fix test_snowflake

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* Try to fix tests

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* fix tests

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* Try Fix snowflake Import

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* snowflake test passed

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---------

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Co-authored-by: Kevin Su <pingsutw@apache.org>
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* run test_missing_return_value on python 3.10+ (#2637)

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* [Elastic] Fix context usage and apply fix to fork method (#2628)

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* Add flytekit-omegaconf plugin (#2299)

* add flytekit-hydra

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* fix small typo readme

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* ruff ruff

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* lint more

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* rename plugin into flytekit-omegaconf

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* lint sort imports

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* use flytekit logger

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* use flytekit logger #2

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* fix typing info in is_flatable

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* use default_factory instead of mutable default value

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* add python3.11 and python3.12 to setup.py

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* make fmt

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* define error message only once

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* add docstring

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* remove GenericEnumTransformer and tests

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* fallback to TypeEngine.get_transformer(node_type) to find suitable transformer

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* explicit valueerrors instead of asserts

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* minor style improvements

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* remove obsolete warnings

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* import flytekit logger instead of instantiating our own

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* docstrings in reST format

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* refactor transformer mode

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* improve docs

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* refactor dictconfig class into smaller methods

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* add unit tests for dictconfig transformer

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* refactor of parse_type_description()

Signed-off-by: mg515 <miha.garafolj@gmail.com>

* add omegaconf plugin to pythonbuild.yaml

---------

Signed-off-by: mg515 <miha.garafolj@gmail.com>
Signed-off-by: Eduardo Apolinario <eapolinario@users.noreply.github.com>
Co-authored-by: Eduardo Apolinario <eapolinario@users.noreply.github.com>
Signed-off-by: mao3267 <chenvincent610@gmail.com>

* Adds extra-index-url to default image builder (#2636)

Signed-off-by: Thomas J. Fan <thomasjpfan@gmail.com>
Co-authored-by: Kevin Su <pingsutw@apache.org>
Signed-off-by: mao3267 <chenvincent610@gmail.com>

* reference_task should inherit from PythonTask (#2643)

Signed-off-by: Kevin Su <pingsutw@apache.org>
Signed-off-by: mao3267 <chenvincent610@gmail.com>

* Fix Get Agent Secret Using Key (#2644)

Signed-off-by: Future-Outlier <eric901201@gmail.com>
Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: prevent converting Flyte types as custom dataclasses

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: add None to output type

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* test: add unit test for nested dataclass inputs

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* test: add unit tests for nested dataclass, dataclass default value as None, and flyte type exceptions

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: handle NoneType as default value of list type dataclass members

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: add comments for `has_nested_dataclass` function

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: make lint

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* fix: update tests regarding input through file and pipe

Signed-off-by: mao3267 <chenvincent610@gmail.com>

* Make JsonParamType convert faster

Signed-off-by: Future-Outlier <eric901201@gmail.com>

* make has_nested_dataclass func more clean and add tests for dataclass_with_optional_fields

Signed-off-by: Future-Outlier <eric901201@gmail.com>

* make logic more backward compatible

Signed-off-by: Future-Outlier <eric901201@gmail.com>

* fix: handle indexing errors in dict/list while checking nested dataclass, add comments

Signed-off-by: mao3267 <chenvincent610@gmail.com>

---------

Signed-off-by: mao3267 <chenvincent610@gmail.com>
Co-authored-by: Kevin Su <pingsutw@apache.org>
Co-authored-by: Future-Outlier <eric901201@gmail.com>
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4 participants