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bringing in data-lessons and resolving conflicts
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# wrangling-genomics | ||
Lesson for quality control and wrangling genomics data | ||
# Wrangling Genomics | ||
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Amazon public AMI for this tutorial is "dataCgen-qc" | ||
Lesson for quality control and wrangling genomics data. This repository is maintained by [Luis Avila](https://github.com/lmavila), and [Niel Infante](https://github.com/NielInfante). | ||
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Amazon public AMI for this tutorial is "dataCgen-qc". | ||
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## Background | ||
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Wrangling genomics trains novice learners on a variant calling workflow. Participants will learn how to evaluate sequence quality and what to do if it is not good. We will then cover aligning reads to a genome, and calling variants, as well as discussing different file formats. Results will be visualized. Finally, we will cover how to automate the process by building a shell script. | ||
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It builds on the work of [Software Carpentry](http://software-carpentry.org/) and [Data Carpentry](http://www.datacarpentry.org/). | ||
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## Contribution | ||
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There are many ways of contributing to Library Carpentry: | ||
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- Join our [![Gitter chat](https://badges.gitter.im/data-lessons/wrangling-genomics.png)](https://gitter.im/wrangling-genomics/Lobby) | ||
- Follow updates on our *soon to be active* [Twitter](https://twitter.com/WranglingGenomics). | ||
- Make a suggestion or correct an error by [raising an Issue](https://github.com/data-lessons/wrangling-genomics/issues). | ||
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## Code of Conduct | ||
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All participants should agree to abide by the [Software Carpentry Code of Conduct](http://software-carpentry.org/conduct/). | ||
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## Authors | ||
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Wrangling genomics is authored and maintained by the [community](https://github.com/data-lessons/wrangling-genomics/network/members). | ||
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## Citation | ||
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Please cite as: | ||
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Wrangling Genomics. June 2017. http://data-lessons.github.io/wrangling-genomics/. |
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layout: page | ||
title: Discussion | ||
permalink: /discuss/ | ||
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layout: page | ||
title: "Instructor Notes" | ||
permalink: /guide/ | ||
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