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Merge pull request /issues/242 from datacarpentry/zkamvar-patch-1
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[markdown] fix ZSH callout
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zkamvar authored May 3, 2023
2 parents 3a32b4e + 7f92e5a commit ab773a8
Showing 1 changed file with 10 additions and 8 deletions.
18 changes: 10 additions & 8 deletions episodes/02-quality-control.md
Original file line number Diff line number Diff line change
Expand Up @@ -515,15 +515,17 @@ $ scp dcuser@ec2-34-238-162-94.compute-1.amazonaws.com:~/dc_workshop/results/fas
> If you are using zsh instead of bash (macOS for example changed the default recently to zsh), it is
> likely that a `no matches found` error will be displayed. The reason for this is that the wildcard
> ("*") is not correctly interpreted. To fix this problem the wildcard needs to be escaped with a "\\":
>> ~~~
>> $ scp dcuser@ec2-34-238-162-94.compute-1.amazonaws.com:~/dc_workshop/results/fastqc_untrimmed_reads/\*.html ~/Desktop/fastqc_html
>> ~~~
>> {: .bash}
> ~~~
> $ scp dcuser@ec2-34-238-162-94.compute-1.amazonaws.com:~/dc_workshop/results/fastqc_untrimmed_reads/\*.html ~/Desktop/fastqc_html
> ~~~
> {: .bash}
>
> Alternatively, you can put the whole path into quotation marks:
>> ~~~
>> $ scp "dcuser@ec2-34-238-162-94.compute-1.amazonaws.com:~/dc_workshop/results/fastqc_untrimmed_reads/*.html" ~/Desktop/fastqc_html
>> ~~~
>> {: .bash}
> ~~~
> $ scp "dcuser@ec2-34-238-162-94.compute-1.amazonaws.com:~/dc_workshop/results/fastqc_untrimmed_reads/*.html" ~/Desktop/fastqc_html
> ~~~
> {: .bash}
>
{: .callout}
As a reminder, the first part
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