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removed expl
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aschuerch authored Nov 21, 2019
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Showing 1 changed file with 1 addition and 4 deletions.
5 changes: 1 addition & 4 deletions episodes/05-automation.md
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Expand Up @@ -119,10 +119,7 @@ fastqc *.fastq*
~~~
{: .output}

Our next line will create a new directory to hold our FastQC output files. Here we are using the `-p` option for `mkdir`. This
option allows `mkdir` to create the new directory, even if one of the parent directories doesn't already exist. It also supresses
errors if the directory already exists, without overwriting that directory. It is a good idea to use this option in your shell
scripts to avoid running into errors if you don't have the directory structure you think you do.
Our next line will create a new directory to hold our FastQC output files. Here we are using the `-p` option for `mkdir` again. It is a good idea to use this option in your shell scripts to avoid running into errors if you don't have the directory structure you think you do.

~~~
mkdir -p ~/dc_workshop/results/fastqc_untrimmed_reads
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