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Dualspace update #2294

Merged
merged 180 commits into from
Sep 21, 2023
Merged

Dualspace update #2294

merged 180 commits into from
Sep 21, 2023

Commits on Apr 21, 2021

  1. Use dualspace ufl branch in ci

    @indiamai
    indiamai committed Apr 21, 2021
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Commits on May 4, 2021

  1. Use dualspace ufl branch in ci

    @indiamai
    indiamai committed May 4, 2021
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Commits on May 5, 2021

  1. Merge branch 'dualspace' of https://github.com/firedrakeproject/fired… 

    …rake into dualspace
    @indiamai
    indiamai committed May 5, 2021
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Commits on May 11, 2021

  1. loose first draft of assemble changes

    @indiamai
    indiamai committed May 11, 2021
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Commits on May 17, 2021

  1. further attempts at firedrake cofunction

    @indiamai
    indiamai committed May 17, 2021
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Commits on May 19, 2021

  1. Assembling Formsum + tests

    @indiamai
    indiamai committed May 19, 2021
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Commits on May 21, 2021

  1. Add assembled matrix

    @indiamai
    indiamai committed May 21, 2021
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  2. update assertion in linear solve

    @indiamai
    indiamai committed May 21, 2021
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Commits on May 24, 2021

  1. Basic tests passing, add dual with geometry

    @indiamai
    indiamai committed May 24, 2021
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Commits on May 26, 2021

  1. Clean up + add matrix-matrix action

    @indiamai
    indiamai committed May 26, 2021
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  2. Isolate broken test outside pytest temporarily

    @indiamai
    indiamai committed May 26, 2021
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Commits on Jun 2, 2021

  1. Fix assemble issue and comment

    @indiamai
    indiamai committed Jun 2, 2021
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  2. Lint (finally)

    @indiamai
    indiamai committed Jun 2, 2021
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Commits on Jun 10, 2021

  1. tidying up

    @indiamai
    indiamai committed Jun 10, 2021
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Commits on Jul 6, 2021

  1. fixing merge conflicts

    @colinjcotter
    colinjcotter committed Jul 6, 2021
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  2. Use dualspace ufl branch in actions workflow

    @colinjcotter
    colinjcotter authored Jul 6, 2021
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  3. fixing lint

    @colinjcotter
    colinjcotter committed Jul 6, 2021
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Commits on Nov 29, 2021

  1. Merge master

    @nbouziani
    nbouziani committed Nov 29, 2021
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Commits on Nov 30, 2021

  1. Add firedrake.Coargument

    @nbouziani
    nbouziani committed Nov 30, 2021
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  2. Remove ABCMeta from MatrixBase

    @nbouziani
    nbouziani committed Nov 30, 2021
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  3. Add UFL branch

    @nbouziani
    nbouziani committed Nov 30, 2021
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  4. Cleanup

    @nbouziani
    nbouziani committed Nov 30, 2021
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Commits on Dec 1, 2021

  1. Workaround for UFLType

    @nbouziani
    nbouziani committed Dec 1, 2021
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  2. Fix test_assemble_formbase.py

    @nbouziani
    nbouziani committed Dec 1, 2021
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  3. Fix split for Cofunction

    @nbouziani
    nbouziani committed Dec 1, 2021
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Commits on Dec 6, 2021

  1. Fix pyadjoint (chapter 1)

    @nbouziani
    nbouziani committed Dec 6, 2021
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Commits on Dec 7, 2021

  1. Update Cofunction assign + add test

    @nbouziani
    nbouziani committed Dec 7, 2021
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  2. Fix test_quadrature

    @nbouziani
    nbouziani committed Dec 7, 2021
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  3. Fix syntax for Cofunction

    @nbouziani
    nbouziani committed Dec 7, 2021
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  4. Add ConstantValue case in Cofunction.assign

    @nbouziani
    nbouziani committed Dec 7, 2021
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Commits on Dec 9, 2021

  1. Fix sub function in solving_utils

    @nbouziani
    nbouziani committed Dec 9, 2021
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Commits on Dec 14, 2021

  1. Fix few things with pyadjoint

    @nbouziani
    nbouziani committed Dec 14, 2021
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  2. Fix pyadjoint

    @nbouziani
    nbouziani committed Dec 14, 2021
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Commits on Dec 15, 2021

  1. Fix firedrake tests (chapter 1)

    @nbouziani
    nbouziani committed Dec 15, 2021
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  2. Update docs.yml

    @nbouziani
    nbouziani authored Dec 15, 2021
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  3. Add node_set to Cofunction

    @nbouziani
    nbouziani committed Dec 15, 2021
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  4. Merge branch 'dualspace_update' of github.com:firedrakeproject/firedr… 

    …ake into dualspace_update
    @nbouziani
    nbouziani committed Dec 15, 2021
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  5. Update docs.yml

    @nbouziani
    nbouziani committed Dec 15, 2021
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  6. Other attempt to fix docs.yml

    @nbouziani
    nbouziani committed Dec 15, 2021
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  7. Fix firedrake tests (chapter 2)

    @nbouziani
    nbouziani committed Dec 15, 2021
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  8. Fix firedrake tests (chapter 3)

    @nbouziani
    nbouziani committed Dec 15, 2021
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  9. Modify AssembledVector

    @nbouziani
    nbouziani committed Dec 15, 2021
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  10. Slate: assembled vector data can be a cofunction now.

    @sv2518
    sv2518 committed Dec 15, 2021
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  11. Cofunction: introduce cell_node_map function

    @sv2518
    sv2518 committed Dec 15, 2021
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  12. Slate: check fo cofunction not basecoefficient in the coeff map gener… 

    …ation
    @sv2518
    sv2518 committed Dec 15, 2021
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Commits on Dec 18, 2021

  1. Expunge UFLType from Firedrake

    @nbouziani
    nbouziani committed Dec 18, 2021
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Commits on Dec 23, 2021

  1. Fix Interpolate block

    @nbouziani
    nbouziani committed Dec 23, 2021
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Commits on Jan 16, 2022

  1. Fix notebook 11 by computing the riesz representer of the adjoint

    @nbouziani
    nbouziani committed Jan 16, 2022
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  2. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
    nbouziani committed Jan 16, 2022
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  3. Update docs.yml

    @nbouziani
    nbouziani authored Jan 16, 2022
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  4. Docstring whitespace

    @nbouziani
    nbouziani committed Jan 16, 2022
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Commits on Jan 21, 2022

  1. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Jul 12, 2022

  1. Resolve conflicts (merge master)

    @nbouziani
    nbouziani committed Jul 12, 2022
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  2. Fix lint

    @nbouziani
    nbouziani committed Jul 12, 2022
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  3. Fix UFL branch name (dualspace_update got merged)

    @nbouziani
    nbouziani committed Jul 12, 2022
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  4. Clean *.bib files

    @nbouziani
    nbouziani committed Jul 12, 2022
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Commits on Jul 13, 2022

  1. Merge master

    @nbouziani
    nbouziani committed Jul 13, 2022
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Commits on Jul 15, 2022

  1. Update assembly doc

    @nbouziani
    nbouziani committed Jul 15, 2022
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  2. Fix bug in FunctionMergeBlock

    @nbouziani
    nbouziani committed Jul 15, 2022
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Commits on Jul 20, 2022

  1. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
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  2. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Jul 21, 2022

  1. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
    nbouziani committed Jul 21, 2022
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  2. Merge dualspace branch

    @nbouziani
    nbouziani committed Jul 21, 2022
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  3. Add form assembly dispatcher

    @nbouziani
    nbouziani committed Jul 21, 2022
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Commits on Jul 22, 2022

  1. Fix function space check in _get_map

    @nbouziani
    nbouziani committed Jul 22, 2022
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  2. Make ImplicitMatrixContext compatible with Cofunction

    @nbouziani
    nbouziani committed Jul 22, 2022
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  3. Fix few things

    @nbouziani
    nbouziani committed Jul 22, 2022
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  4. Fix failing tests

    @nbouziani
    nbouziani committed Jul 22, 2022
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Commits on Jul 27, 2022

  1. Update check_pde_args

    @nbouziani
    nbouziani committed Jul 27, 2022
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  2. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
    nbouziani committed Jul 27, 2022
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Commits on Aug 3, 2022

  1. Update assembly of ufl.Matrix's sum

    @nbouziani
    nbouziani committed Aug 3, 2022
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  2. Fix lint E275

    @nbouziani
    nbouziani committed Aug 3, 2022
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Commits on Aug 10, 2022

  1. Overwrite equals for firedrake.Coargument

    @nbouziani
    nbouziani committed Aug 10, 2022
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Commits on Aug 22, 2022

  1. Add support for ZeroBaseForm

    @nbouziani
    nbouziani committed Aug 22, 2022
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  2. Fix Matrix's arguments

    @nbouziani
    nbouziani committed Aug 22, 2022
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  3. Fix lint

    @nbouziani
    nbouziani committed Aug 22, 2022
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  4. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Oct 21, 2022

  1. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Oct 25, 2022

  1. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Jan 11, 2023

  1. Merge master

    @nbouziani
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  2. Merge master

    @nbouziani
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Commits on Jan 24, 2023

  1. Merge master

    @nbouziani
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  2. Remove spurious diff

    @nbouziani
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  3. Merge master

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  4. Merge dual

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Commits on Jan 25, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
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  2. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
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Commits on Jan 26, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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  2. Establish distinction between public self.comm and internal private s… 

    …elf._comm attributes for Cofunction
    @nbouziani
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  3. Equip Cofunctions with a Riesz representation method to get the Riesz… 

    … representation for a given map (l2, L2, H1)
    @nbouziani
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  4. Add conj handler to CoefficientCollector

    @nbouziani
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  5. Annotation of 1-forms operates on Cofunction

    @nbouziani
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  6. Fix lack of annotations for Riesz representation of Cofunctions

    @nbouziani
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Commits on Jan 29, 2023

  1. Remove conj handler in CoefficientCollector

    @nbouziani
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Commits on Mar 18, 2023

  1. Remove UFL branch

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  2. Merge master

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  3. Merge master

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Commits on Mar 19, 2023

  1. Fix decorator typo

    @nbouziani
    nbouziani committed Mar 19, 2023
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  2. Fix decorator typo

    @nbouziani
    nbouziani committed Mar 19, 2023
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  3. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
    nbouziani committed Mar 19, 2023
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  4. Clean up

    @nbouziani
    nbouziani committed Mar 19, 2023
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  5. Fix doc

    @nbouziani
    nbouziani committed Mar 19, 2023
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  6. Fix indent

    @nbouziani
    nbouziani committed Mar 19, 2023
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Commits on May 29, 2023

  1. Merge master

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  2. Merge master

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  3. Merge dual

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Commits on Jun 18, 2023

  1. Merge master

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Commits on Jun 21, 2023

  1. Fix domain extractions for parloop's arguments

    @nbouziani
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Commits on Jun 22, 2023

  1. Extract domains: check if Constant is the only edge case

    @nbouziani
    nbouziani committed Jun 22, 2023
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Commits on Jun 24, 2023

  1. Finish _extract_domains

    @nbouziani
    nbouziani committed Jun 24, 2023
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  2. Address comments

    @nbouziani
    nbouziani committed Jun 24, 2023
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  3. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
    nbouziani committed Jun 24, 2023
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Commits on Jun 25, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
    nbouziani committed Jun 25, 2023
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  2. Wrap extract_unique_domain for Cofunctions

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    nbouziani committed Jun 25, 2023
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  3. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
    nbouziani committed Jun 25, 2023
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  4. Fix tests

    @nbouziani
    nbouziani committed Jun 25, 2023
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  5. Extend action assembly to 1-form against 1-form

    @nbouziani
    nbouziani committed Jun 25, 2023
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Commits on Jun 26, 2023

  1. Add imul for cofunction + fix pytorch type check

    @nbouziani
    nbouziani committed Jun 26, 2023
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  2. Fix some tests

    @nbouziani
    nbouziani committed Jun 26, 2023
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  3. Fix typo

    @nbouziani
    nbouziani committed Jun 26, 2023
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Commits on Jun 29, 2023

  1. Support solve(a == L, u) with L a Cofunction

    @nbouziani
    nbouziani committed Jun 29, 2023
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  2. Fix tensor update for base form assembly

    @nbouziani
    nbouziani committed Jun 29, 2023
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  3. Fix some tests

    @nbouziani
    nbouziani committed Jun 29, 2023
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  4. Add fix_dual ufl branch

    @nbouziani
    nbouziani committed Jun 29, 2023
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Commits on Jul 4, 2023

  1. Fix riesz representation's annotation: solve with a rhs Cofunction

    @nbouziani
    nbouziani committed Jul 4, 2023
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Commits on Jul 6, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace_update

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    nbouziani committed Jul 6, 2023
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  2. Extend derivative check to Cofunction

    @nbouziani
    nbouziani committed Jul 6, 2023
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  3. Add zero-order FormSum assembly

    @nbouziani
    nbouziani committed Jul 6, 2023
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  4. Transmit weight kwarg through base form assembly visitor

    @nbouziani
    nbouziani committed Jul 6, 2023
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Commits on Jul 7, 2023

  1. Minor fixes

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    nbouziani committed Jul 7, 2023
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Commits on Jul 13, 2023

  1. FiredrakeTorchOperator: Take the dual output space as the adjoint inp… 

    …ut space
    @nbouziani
    nbouziani committed Jul 13, 2023
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  2. Extend riesz representation mapping to Function for l2 case

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    nbouziani committed Jul 13, 2023
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  3. Notebook 11: Update the way of getting riesz representer

    @nbouziani
    nbouziani committed Jul 13, 2023
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  4. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
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Commits on Jul 14, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace

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  2. Adapt FunctionMixin._ad_mul to cofunctions

    @nbouziani
    nbouziani committed Jul 14, 2023
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  3. Update pointwise division in linear wave equation demo

    @nbouziani
    nbouziani committed Jul 14, 2023
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  4. FiredrakeTorchOperator: Simplify constant adjoint input to sidestep c… 

    …onstant issues
    @nbouziani
    nbouziani committed Jul 14, 2023
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  5. Fix Coargument form argument analysis

    @nbouziani
    nbouziani committed Jul 14, 2023
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Commits on Jul 18, 2023

  1. Coarguments have one argument in the primal space and one in the dual… 

    … space
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  2. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
    nbouziani committed Jul 18, 2023
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  3. Merge remote-tracking branch 'origin/JDBetteridge/installation_hotfix… 

    …' into dualspace_update
    @nbouziani
    nbouziani committed Jul 18, 2023
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Commits on Aug 20, 2023

  1. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
    nbouziani committed Aug 20, 2023
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Commits on Aug 23, 2023

  1. Merge dualspace

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    nbouziani committed Aug 23, 2023
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  2. Move Pyadjoint dual space changes to Firedrake

    @nbouziani
    nbouziani committed Aug 23, 2023
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Commits on Aug 25, 2023

  1. Fix FunctionMixin import

    @nbouziani
    nbouziani committed Aug 25, 2023
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Commits on Aug 26, 2023

  1. Update function used to extract unique domain during assembly

    @nbouziani
    nbouziani committed Aug 26, 2023
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Commits on Sep 5, 2023

  1. Fix TLM of Assemble in spatial coordinate case

    @nbouziani
    nbouziani committed Sep 5, 2023
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  2. Add comment

    @nbouziani
    nbouziani committed Sep 5, 2023
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Commits on Sep 7, 2023

  1. Extend assembly arguments type to ufl.Argument

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  2. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
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  3. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

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  4. Assemble block: fix ZeroBaseForm output for adjoint of spatialcoordin… 

    …ates
    @nbouziani
    nbouziani committed Sep 7, 2023
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Commits on Sep 10, 2023

  1. Lift some fixes from external operator branch

    @nbouziani
    nbouziani committed Sep 10, 2023
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Commits on Sep 12, 2023

  1. Fix a few things

    @nbouziani
    nbouziani committed Sep 12, 2023
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  2. mer

    @nbouziani
    nbouziani committed Sep 12, 2023
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Commits on Sep 13, 2023

  1. Strenghten criterion on preprocessing assemble_base_form input

    @nbouziani
    nbouziani committed Sep 13, 2023
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  2. Fix docs test (hopefully)

    @nbouziani
    nbouziani committed Sep 13, 2023
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  3. Fix docs (attempt 2)

    @nbouziani
    nbouziani committed Sep 13, 2023
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Commits on Sep 14, 2023

  1. Update Cofunction's docs

    @nbouziani
    nbouziani committed Sep 14, 2023
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Commits on Sep 18, 2023

  1. Expunge Vector from firedrake.adjoint: adjoint/tlm/hessian values are… 

    … not Vector anymore but Function/Cofunction/float
    @nbouziani
    nbouziani committed Sep 18, 2023
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  2. Fix WithGeometryBase docs

    @nbouziani
    nbouziani committed Sep 18, 2023
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  3. Add riesz_representation to Function objects to get the corresponding… 

    … Cofunction
    @nbouziani
    nbouziani committed Sep 18, 2023
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  4. Merge remote-tracking branch 'origin/master' into dualspace

    @nbouziani
    nbouziani committed Sep 18, 2023
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  5. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
    nbouziani committed Sep 18, 2023
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Commits on Sep 19, 2023

  1. Delete tests/regression/isolated_auxilary.py

    @nbouziani
    nbouziani authored Sep 19, 2023
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  2. Merge remote-tracking branch 'origin/dualspace' into dualspace_update

    @nbouziani
    nbouziani committed Sep 19, 2023
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  3. Clean up output of 11-extract-adjoint-solutions.ipynb

    @nbouziani
    nbouziani committed Sep 19, 2023
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  4. Clean up

    @nbouziani
    nbouziani committed Sep 19, 2023
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  5. Merge remote-tracking branch 'origin/master' into dualspace_update

    @nbouziani
    nbouziani committed Sep 19, 2023
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  6. Don't preprocess slate.TensorBase form

    @nbouziani
    nbouziani committed Sep 19, 2023
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Commits on Sep 20, 2023

  1. Clean up

    @nbouziani
    nbouziani committed Sep 20, 2023
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  2. Additional cleaning

    @nbouziani
    nbouziani committed Sep 20, 2023
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  3. Update .github/workflows/build.yml

    @nbouziani
    nbouziani authored Sep 20, 2023
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  4. Update firedrake/cofunction.py

    @nbouziani
    nbouziani authored Sep 20, 2023
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  5. Update multifunction import (recently changed in UFL upstream)

    @nbouziani
    nbouziani committed Sep 20, 2023
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  6. Address PR's comments

    @nbouziani
    nbouziani committed Sep 20, 2023
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Commits on Sep 21, 2023

  1. Fix bcs tests

    @nbouziani
    nbouziani committed Sep 21, 2023
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  2. Add UFL branch that fixes the pyadjoint tests

    @nbouziani
    nbouziani committed Sep 21, 2023
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  3. Update .github/workflows/build.yml

    @nbouziani
    nbouziani authored Sep 21, 2023
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