Add peak calling for FIRE into ft by mrvollger · Pull Request #94 · fiberseq/fibertools-rs

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Add peak calling for FIRE into ft#94

Add peak calling for FIRE into ft#94
mrvollger wants to merge 27 commits intomainfrom
peak_calling

Commits on Oct 29, 2025

first try at peak calling all in rust, fdr table done but needs testing, also need to turn that into a real peak file

first try at peak calling all in rust, fdr table done but needs testing, also need to turn that into a real peak file

clippy

Commits on Nov 21, 2025

Major refactor of pileup to allow more code to be reusable in prep for peak calling

fix fibertig end being too long (#95)

release: 0.8.1

release notes

first try at peak calling all in rust, fdr table done but needs testing, also need to turn that into a real peak file

first try at peak calling all in rust, fdr table done but needs testing, also need to turn that into a real peak file

clippy

Major refactor of pileup to allow more code to be reusable in prep for peak calling

Merge branch 'peak_calling' of https://github.com/fiberseq/fibertools-rs into peak_calling

Commits on Nov 25, 2025

First peak calling works! Now I need to work on merging adjacent peaks and incoperating the underlying FIRE elements so I can find the natural peak start and end

Finding the natural start and end of local maximum, I now need to do merging

Merging is working I think

Commits on Nov 26, 2025

Added calling by percent accessible and added most of the expected output columns

build fdr one chrom at a time

build fdr one chrom at a time

build fdr one chrom at a time

multi fetch instead of collecting

remove default filtering

Commits on Nov 27, 2025

add a deafult frac fibers filter

better profiling options

add a hidden benchmakr command to help me test the speed of the fiberseq iterator

clean up logging in the new peak calling

Commits on Dec 11, 2025

feat: allow pileup to accept multiple regions or a bed file of regions

Commits on Dec 18, 2025

fix: better error msg

Add peak calling for FIRE into ft#94mrvollger wants to merge 27 commits intomainfiberseq/fibertools-rs:mainfrom peak_callingfiberseq/fibertools-rs:peak_callingCopy head branch name to clipboard

Commits

Commits on Oct 29, 2025

Commits on Nov 21, 2025

Commits on Nov 25, 2025

Commits on Nov 26, 2025

Commits on Nov 27, 2025

Commits on Dec 11, 2025

Commits on Dec 18, 2025

Add peak calling for FIRE into ft#94
mrvollger wants to merge 27 commits intomainfrom
peak_calling