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1. AbAgCDM AbAgCDM Public

   AbAgCDM is a sequence-based framework for modeling antibody–antigen binding under antigen sequence variation. The model is designed to capture mutation-induced changes in binding by jointly learnin…

   Python

2. Structure-Aware-LLM-Ab-Ag-Interaction Structure-Aware-LLM-Ab-Ag-Interaction Public

   Predicting Antibody–Antigen Interactions with Structure-Aware LLMs: Insights from SARS-CoV-2 Variants

   Jupyter Notebook 1

3. AbAffinity AbAffinity Public

   A Large Languge Model to predict binding affinity of scFv antibody sequence against SARS-CoV-2. It takes input of antibody heavy and light chain sequence, and predicts the binding affinity against …

   Jupyter Notebook

4. PyPDBcomplex PyPDBcomplex Public

   PyPDBcomplex is a comprehensive Python toolkit for analyzing protein complex structures, extracting detailed molecular features, and comparing multiple structures. Built for structural biologists a…

   Python 1