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Enable feature filtering (fdge, fpca) to restrict feature types used in analysis #37

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lianos opened this issue May 29, 2020 · 1 comment
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enhancement New feature or request

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lianos commented May 29, 2020

We may want to restrict the feature_universe to a subset of genes/features even before further abundance (or other) based filtering happens.

For instance, you may want to restrict a DGE or PCA to use only protein_coding genes -- by convention these are stored in the meta column of the feature information, but you could also imagine different ways to filter features.

  1. Let's get the feature_universe parameter into fpca (and other places); and
  2. Think of clever ways to pass a feature tibble in there from the shiny interface.
@lianos lianos added the enhancement New feature or request label May 29, 2020
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lianos commented May 25, 2021

This is linked to #20

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