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We may want to restrict the feature_universe to a subset of genes/features even before further abundance (or other) based filtering happens.
For instance, you may want to restrict a DGE or PCA to use only protein_coding genes -- by convention these are stored in the meta column of the feature information, but you could also imagine different ways to filter features.
Let's get the feature_universe parameter into fpca (and other places); and
Think of clever ways to pass a feature tibble in there from the shiny interface.
The text was updated successfully, but these errors were encountered:
We may want to restrict the
feature_universe
to a subset of genes/features even before further abundance (or other) based filtering happens.For instance, you may want to restrict a DGE or PCA to use only
protein_coding
genes -- by convention these are stored in themeta
column of the feature information, but you could also imagine different ways to filter features.feature_universe
parameter into fpca (and other places); andThe text was updated successfully, but these errors were encountered: