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38 Open 5 Closed
38 Open 5 Closed
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Issues list

Update voom workflow to use voomLmFit enhancement New feature or request
#55 opened Oct 11, 2023 by lianos
@lianos
Gracefully handle situations when there are subsets of "active samples" that do not have data from the given assay_name under test bug Something isn't working
#53 opened May 18, 2023 by lianos
@lianos
Update the fpca$percent_var result to a tibble enhancement New feature or request
#52 opened May 3, 2023 by lianos
Add DEqMS support in fdge for proteomics differential abundance analysis enhancement New feature or request
#47 opened Sep 14, 2021 by lianos
@lianos
Add option to run shine() gadgets as RStudio jobs in the backround enhancement New feature or request
#44 opened Apr 26, 2021 by lianos
@lianos
1
Add support for timecourse analysis via the moanin package
#43 opened Dec 14, 2020 by lianos
Minimum logFC value not honored from shiny input of ffsea ORA config UI bug Something isn't working
#42 opened Oct 6, 2020 by lianos
@lianos
1
Add unit test to exercise duplicateCorrelation/block support in compare(ttest1, ttest2) bug Something isn't working
#40 opened Sep 14, 2020 by lianos
@lianos
Enable group-level weight specification in flm_def constrast construction enhancement New feature or request
#39 opened Jul 28, 2020 by lianos
@lianos
Explore using {callr} to launch shine gadgets in background enhancement New feature or request
#38 opened Jul 17, 2020 by lianos
@lianos
1
Enable feature filtering (fdge, fpca) to restrict feature types used in analysis enhancement New feature or request
#37 opened May 29, 2020 by lianos
1
Turn unfds/refds into internal (unexported) S3 generics enhancement New feature or request
#36 opened May 21, 2020 by lianos
@lianos
Provide shiny front end to feature filter in fdgeRunOptions module enhancement New feature or request
#35 opened Apr 7, 2020 by lianos
@lianos
Add group-level average expression columns to fdge output enhancement New feature or request
#32 opened Mar 30, 2020 by lianos
@lianos
Update ffseaView to show ANOVA result enhancement New feature or request
#31 opened Mar 26, 2020 by lianos
@lianos
Improve coloring by feature(s) in fpcaView enhancement New feature or request
#30 opened Mar 23, 2020 by lianos
2 tasks
@lianos
fpcaView resets feature colorings when any aesthetic map is changed bug Something isn't working
#29 opened Mar 23, 2020 by lianos
@lianos
Enable viz.FacilePcaAnalysisResult to support coloring by feature/geneset expression
#28 opened Mar 23, 2020 by lianos
@lianos
Enable pathway analysis over PC loadings in fpcaAnalysis shiny module enhancement New feature or request
#27 opened Mar 21, 2020 by lianos
@lianos
Error trying to install FacileAnalysis 0.2.16
#25 opened Feb 21, 2020 by FleckDaniel
1
Create filter_by_feature_abundance
#24 opened Feb 18, 2020 by lianos biocbox refactor
@lianos
2
biocbox/fdge refactor
#23 opened Feb 18, 2020 by lianos
3 tasks
biocbox refactor
fpca shiny bits does not present extra sample covariates in samples() in UI
#22 opened Feb 17, 2020 by lianos
@lianos
Unify feature filtering approaches (fdge, fpca) enhancement New feature or request
#20 opened Dec 4, 2019 by lianos
@lianos
Implement more robust compare.FacileTtestAnalysisResult (interaction test)
#19 opened Nov 27, 2019 by lianos
2 tasks
@lianos
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