[solution] Habitat_sim installs failing in Colab #1818
Description
Recently, habitat_sim colab installs seem to fail in "import habitat-sim" after successful installtion. It seems to be a complaining about missing library:
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /usr/local/lib/python3.7/dist-packages/scipy/optimize/_group_columns.cpython-37m-x86_64-linux-gnu.so)
The two colab habitat-sim install that I have tried are,
-
!curl -L https://raw.githubusercontent.com/facebookresearch/habitat-sim/master/examples/colab_utils/colab_install.sh | NIGHTLY=false bash -s
Error details while importing habitat-sim in ECCV_2020_Interactivity.ipynb
ImportError Traceback (most recent call last)
in ()
17 from PIL import Image
18
---> 19 import habitat_sim
20 from habitat_sim.utils import common as ut
21 from habitat_sim.utils import viz_utils as vut
11 frames
/usr/local/lib/python3.7/dist-packages/scipy/optimize/_numdiff.py in ()
6 from scipy.sparse.linalg import LinearOperator
7 from ..sparse import issparse, csc_matrix, csr_matrix, coo_matrix, find
----> 8 from ._group_columns import group_dense, group_sparse
9
10
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /usr/local/lib/python3.7/dist-packages/scipy/optimize/_group_columns.cpython-37m-x86_64-linux-gnu.so)
Error details of "import habitat-sim" after install from "https://raw.githubusercontent.com/facebookresearch/habitat-sim/master/examples/colab_utils/colab_install.sh | NIGHTLY=false bash -s"
/content/oreo-pybullet/agent_oreo.py in ()
----> 1 import habitat_sim
2 import numpy as np
3 import quaternion
4 import math
5 import cv2
/usr/local/lib/python3.7/dist-packages/habitat_sim/init.py in ()
11 if not getattr(builtins, "HSIM_SETUP", False):
12 # TODO: kept only for compatibiliy with existing code. Please gradually remove
---> 13 from habitat_sim import (
14 agent,
15 attributes,
/usr/local/lib/python3.7/dist-packages/habitat_sim/agent/init.py in ()
7 # type: ignore
8
----> 9 from .agent import * # noqa: F403
10 from .controls import * # noqa: F403
11
/usr/local/lib/python3.7/dist-packages/habitat_sim/agent/agent.py in ()
29 )
30
---> 31 from .controls import ActuationSpec, ObjectControls
32
33 all = ["ActionSpec", "SixDOFPose", "AgentState", "AgentConfiguration", "Agent"]
/usr/local/lib/python3.7/dist-packages/habitat_sim/agent/controls/init.py in ()
8 from habitat_sim.agent.controls.default_controls import * # noqa: F401, F403
9 from habitat_sim.agent.controls.object_controls import ObjectControls
---> 10 from habitat_sim.agent.controls.pyrobot_noisy_controls import PyRobotNoisyActuationSpec
11
12 all = [
/usr/local/lib/python3.7/dist-packages/habitat_sim/agent/controls/pyrobot_noisy_controls.py in ()
18 import magnum as mn
19 import numpy as np
---> 20 import scipy.stats
21 from attr import Attribute
22 from numpy import ndarray
/usr/local/lib/python3.7/dist-packages/scipy/stats/init.py in ()
439 """
440
--> 441 from .stats import *
442 from .distributions import *
443 from .morestats import *
/usr/local/lib/python3.7/dist-packages/scipy/stats/stats.py in ()
41 import scipy.special as special
42 from scipy import linalg
---> 43 from . import distributions
44 from . import mstats_basic
45 from ._stats_mstats_common import (_find_repeats, linregress, theilslopes,
/usr/local/lib/python3.7/dist-packages/scipy/stats/distributions.py in ()
6 # instead of git blame -Lxxx,+x.
7 #
----> 8 from ._distn_infrastructure import (rv_discrete, rv_continuous, rv_frozen)
9
10 from . import _continuous_distns
/usr/local/lib/python3.7/dist-packages/scipy/stats/_distn_infrastructure.py in ()
22 # for root finding for continuous distribution ppf, and max likelihood
23 # estimation
---> 24 from scipy import optimize
25
26 # for functions of continuous distributions (e.g. moments, entropy, cdf)
/usr/local/lib/python3.7/dist-packages/scipy/optimize/init.py in ()
398 """
399
--> 400 from .optimize import *
401 from ._minimize import *
402 from ._root import *
/usr/local/lib/python3.7/dist-packages/scipy/optimize/optimize.py in ()
34 line_search_wolfe2 as line_search,
35 LineSearchWarning)
---> 36 from ._numdiff import approx_derivative
37 from scipy._lib._util import getfullargspec_no_self as _getfullargspec
38 from scipy._lib._util import MapWrapper
/usr/local/lib/python3.7/dist-packages/scipy/optimize/_numdiff.py in ()
6 from scipy.sparse.linalg import LinearOperator
7 from ..sparse import issparse, csc_matrix, csr_matrix, coo_matrix, find
----> 8 from ._group_columns import group_dense, group_sparse
9
10
ImportError: /usr/lib/x86_64-linux-gnu/libstdc++.so.6: version `GLIBCXX_3.4.26' not found (required by /usr/local/lib/python3.7/dist-packages/scipy/optimize/_group_columns.cpython-37m-x86_64-linux-gnu.so)
Hopefully the details are sufficient to troubleshoot the colab environment working.The installs used to work nicely the last time I checked 3-4 weeks ago.
Thanks.