update LightGBM part to version 3.1.1.99 (git commit 42d1633aebe12482…

…1cff42c728a42551db715168)

.gitignore

@@ -1,16 +1,200 @@
-**/.README.html
-[Bb]uild/
+GPBoost_demo_cache/
+GPBoost_demo_files/
+
+# Build results
+[Dd]ebug/
+[Dd]ebugPublic/
 [Rr]elease/
+[Rr]eleases/
+x64/
+x86/
+bld/
+[Bb]in/
+[Oo]bj/
+[Ll]og/
+[Bb]uild/
+**/.README.html
+
+# Compiled Object files
+*.slo
+*.lo
+*.o
+*.obj
+
+# Precompiled Headers
+*.gch
+*.pch
+
+# Compiled Dynamic libraries
+*.so
+*.dylib
+*.dll
+
+# Fortran module files
+*.mod
+
+# Compiled Static libraries
+*.lai
+*.la
+*.a
+*.lib
+
+# Executables
+*.exe
+*.out
+*.app
+/windows/LightGBM.VC.db
+gpboost
+
+# Created by https://www.gitignore.io/api/python
+
+### Python ###
+!/python-package/gpboost/
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
 
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+prof/
+*.prof
+coverage.xml
+*,cover
+.hypothesis/
+**/coverage.html
+**/coverage.html.zip
+R-package/tests/testthat/Rplots.pdf
+
+# Doxygen documentation
+docs/doxyoutput/
+
+# pyenv
+.python-version
+
+# dotenv
+.env
+
+# virtualenv
+.venv/
+venv/
+ENV/
+
+# Spyder project settings
+.spyderproject
+
+# Rope project settings
+.ropeproject
+
+# R testing artefact
+gpboost.model
+
+# saved or dumped model/data
+*.model
+*.pkl
+*.bin
+
+# macOS
+**/.DS_Store
+
+# VSCode
+.vscode
+
+# IntelliJ/CLion
+.idea
+*.iml
+/cmake-build-debug/
+
+# Files from local Python install
 python-package/LICENSE
-python-package/build/
 python-package/build_cpp/
 python-package/compile/
-python-package/gpboost.egg-info/
-python-package/dist/
+python-package/gpboost/VERSION.txt
 
-gpboost_r/
+# R build artefacts
+**/autom4te.cache/
+conftest*
+R-package/config.status
+!R-package/data/agaricus.test.rda
+!R-package/data/agaricus.train.rda
+!R-package/data/bank.rda
+R-package/docs
+R-package/src/CMakeLists.txt
+R-package/src/Makevars
+R-package/src/lib_gpboost.so.dSYM/
+R-package/src/src/
+R-package/src-x64
+R-package/src-i386
+R-package/**/VERSION.txt
+**/Makevars.win
+gpboost_r/*
 gpboost*.tar.gz
+gpboost*.tgz
 gpboost.Rcheck/
+miktex*.zip
+*.def
+
+# Files created by R and Python examples and tests
+**/lgb-Dataset.data
+**/lgb.Dataset.data
+**/model.txt
+**/lgb-model.txt
+
+# Files from interactive R sessions
+.Rproj.user
+**/.Rapp.history
+**/.Rhistory
+*.rda
+*.RData
+*.rds
+
+# Files generated by aspell
+**/*.bak
+
+# GraphViz artifacts
+*.gv
+*.gv.*
 
-**/.Rhistory
+# credentials and key material
+*.env
+*.pem
+*.pub
+*.rdp
+*_rsa

CMakeIntegratedOpenCL.cmake

@@ -0,0 +1,85 @@
+set(BUILD_SHARED_LIBS OFF CACHE BOOL "" FORCE)
+set(BOOST_VERSION_DOT "1.74")
+string(REPLACE "." "_" BOOST_VERSION_UNDERSCORE ${BOOST_VERSION_DOT})
+
+set(OPENCL_HEADER_REPOSITORY "https://github.com/KhronosGroup/OpenCL-Headers.git")
+set(OPENCL_HEADER_TAG "1b2a1850f410aaaaeaa56cead5a179b5aea4918e")
+
+set(OPENCL_LOADER_REPOSITORY "https://github.com/KhronosGroup/OpenCL-ICD-Loader.git")
+set(OPENCL_LOADER_TAG "98ca71fb9f8484f1cd1999f55224bf9e8d18693b")
+
+set(BOOST_REPOSITORY "https://github.com/boostorg/boost.git")
+set(BOOST_TAG "boost-${BOOST_VERSION_DOT}.0")
+
+# Build Independent OpenCL library
+include(FetchContent)
+FetchContent_Declare(OpenCL-Headers GIT_REPOSITORY ${OPENCL_HEADER_REPOSITORY} GIT_TAG ${OPENCL_HEADER_TAG})
+FetchContent_GetProperties(OpenCL-Headers)
+if(NOT OpenCL-Headers_POPULATED)
+  FetchContent_Populate(OpenCL-Headers)
+  message(STATUS "Populated OpenCL Headers")
+endif()
+set(OPENCL_ICD_LOADER_HEADERS_DIR ${opencl-headers_SOURCE_DIR} CACHE PATH "") # for OpenCL ICD Loader
+set(OpenCL_INCLUDE_DIR ${opencl-headers_SOURCE_DIR} CACHE PATH "") # for Boost::Compute
+
+FetchContent_Declare(OpenCL-ICD-Loader GIT_REPOSITORY ${OPENCL_LOADER_REPOSITORY} GIT_TAG ${OPENCL_LOADER_TAG})
+FetchContent_GetProperties(OpenCL-ICD-Loader)
+if(NOT OpenCL-ICD-Loader_POPULATED)
+  FetchContent_Populate(OpenCL-ICD-Loader)
+  set(USE_DYNAMIC_VCXX_RUNTIME ON)
+  add_subdirectory(${opencl-icd-loader_SOURCE_DIR} ${opencl-icd-loader_BINARY_DIR} EXCLUDE_FROM_ALL)
+  message(STATUS "Populated OpenCL ICD Loader")
+endif()
+list(APPEND INTEGRATED_OPENCL_INCLUDES ${OPENCL_ICD_LOADER_HEADERS_DIR})
+list(APPEND INTEGRATED_OPENCL_LIBRARIES ${opencl-icd-loader_BINARY_DIR}/Release/OpenCL.lib cfgmgr32.lib runtimeobject.lib)
+list(APPEND INTEGRATED_OPENCL_DEFINITIONS CL_TARGET_OPENCL_VERSION=120)
+
+# Build Independent Boost libraries
+include(ExternalProject)
+include(ProcessorCount)
+ProcessorCount(J)
+set(BOOST_BASE "${PROJECT_BINARY_DIR}/Boost")
+set(BOOST_BOOTSTRAP "${BOOST_BASE}/source/bootstrap.bat")
+set(BOOST_BUILD "${BOOST_BASE}/source/b2.exe")
+set(BOOST_FLAGS "")
+list(APPEND BOOST_SUBMODULES "libs/algorithm" "libs/align" "libs/any" "libs/array" "libs/assert" "libs/bind" "libs/chrono" "libs/compute" "libs/concept_check" "libs/config" "libs/container" "libs/container_hash" "libs/core" "libs/detail" "libs/filesystem" "libs/foreach" "libs/format" "libs/function" "libs/function_types" "libs/fusion" "libs/headers" "libs/integer" "libs/io" "libs/iterator" "libs/lexical_cast" "libs/math" "libs/move" "libs/mpl" "libs/multi_index" "libs/numeric/conversion" "libs/optional" "libs/predef" "libs/preprocessor" "libs/property_tree" "libs/range" "libs/ratio" "libs/serialization" "libs/smart_ptr" "libs/static_assert" "libs/system" "libs/throw_exception" "libs/tuple" "libs/typeof" "libs/type_index" "libs/type_traits" "libs/utility" "libs/uuid" "libs/winapi" "tools/boost_install" "tools/build")
+ExternalProject_Add(Boost
+  TMP_DIR "${BOOST_BASE}/tmp"
+  STAMP_DIR "${BOOST_BASE}/stamp"
+  DOWNLOAD_DIR "${BOOST_BASE}/download"
+  SOURCE_DIR "${BOOST_BASE}/source"
+  BINARY_DIR "${BOOST_BASE}/source"
+  INSTALL_DIR "${BOOST_BASE}/install"
+  GIT_REPOSITORY ${BOOST_REPOSITORY}
+  GIT_TAG ${BOOST_TAG}
+  GIT_SUBMODULES ${BOOST_SUBMODULES}
+  GIT_SHALLOW ON
+  UPDATE_COMMAND ""
+  PATCH_COMMAND ""
+  CONFIGURE_COMMAND ${BOOST_BOOTSTRAP}
+  BUILD_COMMAND ${BOOST_BUILD} -sBOOST_ROOT=${BOOST_BASE}/source -a -q -j ${J} --with-headers --with-chrono --with-filesystem --with-system link=static runtime-link=shared variant=release threading=multi cxxflags="${BOOST_FLAGS}"
+  INSTALL_COMMAND ""
+)
+set(BOOST_INCLUDE "${BOOST_BASE}/source" CACHE PATH "")
+set(BOOST_LIBRARY "${BOOST_BASE}/source/stage/lib" CACHE PATH "")
+list(APPEND INTEGRATED_OPENCL_INCLUDES ${BOOST_INCLUDE})
+if(MSVC)
+  if(${MSVC_VERSION} GREATER 1929)
+    message(FATAL_ERROR "Unrecognized MSVC version number: ${MSVC_VERSION}")
+  elseif(${MSVC_VERSION} GREATER 1919)
+    set(MSVC_TOOLCHAIN_ID "142")
+  elseif(${MSVC_VERSION} GREATER 1909)
+    set(MSVC_TOOLCHAIN_ID "141")
+  elseif(${MSVC_VERSION} GREATER 1899)
+    set(MSVC_TOOLCHAIN_ID "140")
+  else()
+    message(FATAL_ERROR "Unrecognized MSVC version number: ${MSVC_VERSION}")
+  endif()
+  list(APPEND INTEGRATED_OPENCL_LIBRARIES ${BOOST_LIBRARY}/libboost_filesystem-vc${MSVC_TOOLCHAIN_ID}-mt-x64-${BOOST_VERSION_UNDERSCORE}.lib)
+  list(APPEND INTEGRATED_OPENCL_LIBRARIES ${BOOST_LIBRARY}/libboost_system-vc${MSVC_TOOLCHAIN_ID}-mt-x64-${BOOST_VERSION_UNDERSCORE}.lib)
+  list(APPEND INTEGRATED_OPENCL_LIBRARIES ${BOOST_LIBRARY}/libboost_chrono-vc${MSVC_TOOLCHAIN_ID}-mt-x64-${BOOST_VERSION_UNDERSCORE}.lib)
+else()
+  message(FATAL_ERROR "Integrated OpenCL build is not yet available for MinGW")
+endif()
+
+set(BUILD_SHARED_LIBS ON CACHE BOOL "" FORCE)