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  1. BOM_manuscript_data_scripts BOM_manuscript_data_scripts Public

    Repository of data and scripts used in the manuscript

    Jupyter Notebook 4

  2. enhancer_turnover enhancer_turnover Public

    Code used for the project "DNA replication timing predicts transcription factor binding and the rate of enhancer turnover"

    R 1

  3. enformer-pytorch-fine-tune enformer-pytorch-fine-tune Public

    Forked from lucidrains/enformer-pytorch

    Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

    Python 1

  4. BOM_package BOM_package Public

    BOM: Bag-of-motifs framework to analyzing cis-regulatory regions

    R 1

  5. deepC deepC Public

    Forked from l-z-l/deepC

    A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

    HTML

  6. hyena-dna hyena-dna Public

    Forked from HazyResearch/hyena-dna

    Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

    Assembly

Repositories

Showing 10 of 11 repositories
  • BOM_package Public

    BOM: Bag-of-motifs framework to analyzing cis-regulatory regions

    ewonglab/BOM_package’s past year of commit activity
    R 1 GPL-3.0 0 0 0 Updated Dec 6, 2024
  • BOM_manuscript_data_scripts Public

    Repository of data and scripts used in the manuscript

    ewonglab/BOM_manuscript_data_scripts’s past year of commit activity
    Jupyter Notebook 4 0 0 0 Updated Nov 21, 2024
  • LUAD-aging-project Public
    ewonglab/LUAD-aging-project’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Nov 18, 2024
  • ASPEN Public

    Allele-Specific Expression and Imbalance modeling of F1 hybrids in bulk and single-cell data

    ewonglab/ASPEN’s past year of commit activity
    R 0 0 0 0 Updated Nov 7, 2024
  • enhancer_turnover Public

    Code used for the project "DNA replication timing predicts transcription factor binding and the rate of enhancer turnover"

    ewonglab/enhancer_turnover’s past year of commit activity
    R 1 0 0 0 Updated Mar 7, 2024
  • borzoi Public Forked from calico/borzoi

    RNA-seq prediction with deep convolutional neural networks.

    ewonglab/borzoi’s past year of commit activity
    Python 0 Apache-2.0 13 0 0 Updated Feb 2, 2024
  • enformer-pytorch-fine-tune Public Forked from lucidrains/enformer-pytorch

    Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

    ewonglab/enformer-pytorch-fine-tune’s past year of commit activity
    Python 1 MIT 87 0 0 Updated Feb 2, 2024
  • Enformer-eval Public

    This repository containes the file needed to run inference using Enformer

    ewonglab/Enformer-eval’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 24, 2024
  • chrombpnet Public Forked from kundajelab/chrombpnet

    Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)

    ewonglab/chrombpnet’s past year of commit activity
    Jupyter Notebook 0 MIT 36 0 0 Updated Nov 12, 2023
  • hyena-dna Public Forked from HazyResearch/hyena-dna

    Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena

    ewonglab/hyena-dna’s past year of commit activity
    Assembly 0 Apache-2.0 89 0 0 Updated Jul 8, 2023
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