Merge branch 'stxtyper' of github.com:evolarjun/amr into stxtyper #164

	name: C++ CI

	on:
	workflow_dispatch:
	push:
	pull_request:
	repository_dispatch:
	types: [linux-compile-test, install-test]
	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	- name: prerequisites
	run: \|
	sudo apt-get update
	sudo apt-get install -y hmmer ncbi-blast+ git libcurl4-openssl-dev build-essential curl
	- name: make
	run: cat version.txt; make
	- name: download db
	run: ./amrfinder -u
	- name: Software and DB version
	run: ./amrfinder --database_version
	- name: make test
	run: make test
	- name: test for no-overwrite database update (PD-3469 / https://github.com/ncbi/amr/issues/16)
	run: \|
	./amrfinder -u 2>&1 \| tee output
	fgrep 'Skipping update, use amrfinder --force_update to overwrite the existing database' output
	- name: make github_binaries
	run: make github_binaries
	- uses: actions/upload-artifact@v2
	with:
	name: release-binary
	path: amrfinder_binaries_v*.tar.gz

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