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Test ACI

Test ACI #26

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Test ACI

Test ACI #26

Workflow file for this run

.github/workflows/test.yml at ff38ea1
name: Test ACI
on: [pull_request, workflow_dispatch]
run-name: Test ACI
jobs:
test:
runs-on: ubuntu-20.04
steps:
- name: Checkout
uses: actions/checkout@v3
- name: Install dependencies
run: pip install .
- name: Run ACI
run: aci -b tests/data/test.bam -d tests/data/test.bed -o testing
- name: Run ACI version
run: aci -v
- name: Run ACI help
run: aci -h
- name : Final tree
run: tree .
- name : Check final files
run: ls testing/{amplicon_depth.csv,amplicon_depth.png,overall_depth.csv,overall_depth.png}