- San Francisco
- https://www.linkedin.com/in/ericklu/
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bulk-rnaseq-analysis
bulk-rnaseq-analysis PublicA complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression analysis using DESeq2, using example data from Guo et al. 2019.
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pubmed-abstract-compiler
pubmed-abstract-compiler PublicPython script that downloads all pubmed abstracts corresponding to user-specified keyword searches, by performing automated NCBI E-utility queries
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single-cell-rnaseq-analysis
single-cell-rnaseq-analysis PublicA guide for analyzing single-cell RNA-seq data using the R package Seurat. Go from raw data to cell clustering, identifying cell types, custom visualizations, and group-wise analysis of tumor infil…
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web-scraping-NBA-statistics
web-scraping-NBA-statistics PublicUse Python to scrape ESPN for stats on all players in the NBA. Obtain and organize data, calculate statistics, and model using urllib, re, pandas, and scikit-learn.
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python-fastq-downloader
python-fastq-downloader PublicA guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
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R-for-data-science-walkthrough
R-for-data-science-walkthrough PublicA walkthrough of Hadley Wickham and Garrett Grolemund's book, R for data science (r4ds), with my solutions to their exercises and some of my own notes and data explorations.
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