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1. yannikschaelte/dfba_tests yannikschaelte/dfba_tests Public

   Python 2

2. de_analysis de_analysis Public

   Distribution-free differential expression analysis for multi-patients-groups for scRNA-seq data

   Python

3. scverse/scanpy scverse/scanpy Public

   Single-cell analysis in Python. Scales to >1M cells.

   Python 2k 615

4. ICB-DCM/pyPESTO ICB-DCM/pyPESTO Public

   python Parameter EStimation TOolbox

   Python 232 47

5. PEtab-dev/PEtab PEtab-dev/PEtab Public

   PEtab - an SBML and TSV based data format for parameter estimation problems in systems biology

   61 12

6. Benchmarking-Initiative/Benchmark-Models-PEtab Benchmarking-Initiative/Benchmark-Models-PEtab Public

   A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling

   Python 29 18