comment global.yaml and add nodefaults

sreichl · sreichl · commit e4bab5cacfe8 · 2024-12-20T16:22:53.000+01:00
diff --git a/workflow/Snakefile b/workflow/Snakefile
@@ -1,6 +1,6 @@
 
 ##### global workflow dependencies #####
-conda: "envs/global.yaml"
+# conda: "envs/global.yaml"
 
 # libraries
 import yaml
diff --git a/workflow/envs/bowtie2.yaml b/workflow/envs/bowtie2.yaml
@@ -1,7 +1,7 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - samtools=1.12
   - fastp=0.20.1
diff --git a/workflow/envs/datamash.yaml b/workflow/envs/datamash.yaml
@@ -1,6 +1,6 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - datamash=1.8
diff --git a/workflow/envs/macs2_homer.yaml b/workflow/envs/macs2_homer.yaml
@@ -1,7 +1,7 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - perl=5.32.0
   - bioconductor-deseq2=1.30.1
diff --git a/workflow/envs/multiqc.yaml b/workflow/envs/multiqc.yaml
@@ -1,7 +1,7 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - multiqc=1.18
   - python=3.11.6
diff --git a/workflow/envs/pybedtools.yaml b/workflow/envs/pybedtools.yaml
@@ -1,7 +1,7 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - deeptools=3.5.1
   - bedtools=2.27.1
diff --git a/workflow/envs/uropa.yaml b/workflow/envs/uropa.yaml
@@ -1,6 +1,6 @@
 channels:
   - conda-forge
   - bioconda
-  - defaults
+  - nodefaults
 dependencies:
   - uropa=4.0.3
