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1. epigen/MrBiomics epigen/MrBiomics Public

   MrBiomics - Modules & Recipes augment Bioinformatics for Multi-Omics Analyses at Scale

   Python 34 1

2. OpenBioLink/SimulateGPT OpenBioLink/SimulateGPT Public

   Large language models as universal biomedical simulators

   R 14 2

3. epigen/atacseq_pipeline epigen/atacseq_pipeline Public

   Ultimate ATAC-seq Data Processing, Quantification and Annotation Snakemake Workflow and MrBiomics Module.

   Python 47 2

4. epigen/unsupervised_analysis epigen/unsupervised_analysis Public

   A general purpose Snakemake workflow and MrBiomics module to perform unsupervised analyses (dimensionality reduction & cluster analysis) and visualizations of high-dimensional data.

   Python 25 3

5. epigen/dea_limma epigen/dea_limma Public

   A Snakemake workflow and MrBiomics module for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

   R 23 1

6. epigen/enrichment_analysis epigen/enrichment_analysis Public

   A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, pycisTarget and RcisTarget.

   Python 31 1