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@epi2me-labs

EPI2ME

Bioinformatics resources from Oxford Nanopore Technologies Plc

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  1. kraken2-server kraken2-server Public

    Kraken2 Server

    C++ 21 4

  2. wf-transcriptomes wf-transcriptomes Public

    Nextflow 91 38

  3. wf-single-cell wf-single-cell Public

    Python 88 43

  4. wf-bacterial-genomes wf-bacterial-genomes Public

    Small variant calling for haploid samples

    Python 35 19

  5. wf-human-variation wf-human-variation Public

    Nextflow 122 60

  6. fastcat fastcat Public

    Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.

    C 37 4

Repositories

Showing 10 of 30 repositories
  • epi2me-docs Public
    epi2me-labs/epi2me-docs’s past year of commit activity
    HTML 0 0 0 0 Updated May 2, 2025
  • wf-template Public

    Nextflow workflow template repository

    epi2me-labs/wf-template’s past year of commit activity
    Python 18 33 1 0 Updated May 2, 2025
  • epi2me-labs/wf-human-variation’s past year of commit activity
    Nextflow 122 60 35 0 Updated May 2, 2025
  • wf-mpx Public archive
    epi2me-labs/wf-mpx’s past year of commit activity
    Nextflow 5 6 1 0 Updated Apr 29, 2025
  • wf-bacterial-genomes Public

    Small variant calling for haploid samples

    epi2me-labs/wf-bacterial-genomes’s past year of commit activity
    Python 35 19 10 1 Updated Apr 28, 2025
  • wf-artic Public archive

    ARTIC SARS-CoV-2 workflow and reporting

    epi2me-labs/wf-artic’s past year of commit activity
    Nextflow 50 35 11 0 Updated Apr 25, 2025
  • wf-tb-amr Public archive
    epi2me-labs/wf-tb-amr’s past year of commit activity
    Python 4 1 1 0 Updated Apr 24, 2025
  • wf-cas9 Public archive
    epi2me-labs/wf-cas9’s past year of commit activity
    Nextflow 6 2 2 0 Updated Apr 24, 2025
  • ezcharts Public
    epi2me-labs/ezcharts’s past year of commit activity
    Python 20 0 0 0 Updated Apr 24, 2025
  • epi2me-labs/wf-single-cell’s past year of commit activity
    Python 88 43 14 0 Updated Apr 16, 2025

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