Autotests: #5558 - Add ambiguous monomers to the library and allow th…

…eir addition to the canvas - Case 9 - Nucleotides
epam · Sep 26, 2024 · b70e8e9 · b70e8e9
1 parent b7ed2e4
commit b70e8e9
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Showing 46 changed files with 23 additions and 4 deletions.
diff --git a/...s/Macromolecule-editor/Polymer-Bond-Tool/connection-rules-for-nucleotide-monomers.spec.ts b/...s/Macromolecule-editor/Polymer-Bond-Tool/connection-rules-for-nucleotide-monomers.spec.ts
@@ -603,6 +603,25 @@ test.describe('Connection rules for Nucleotide monomers: ', () => {
     //     R5: 'R5',
     //   },
     // },
+    J: {
+      monomerType: 'peptide',
+      fileName:
+        'KET/Peptide-Templates/16 - J - ambiguous alternatives from library (R1,R2).ket',
+      alias: 'J',
+      connectionPoints: {
+        R1: 'R1',
+        R2: 'R2',
+      },
+    },
+    // '%': {
+    //   monomerType: 'peptide',
+    //   fileName: 'KET/Base-Templates/17 - J - ambiguous mixed (R1,R2).ket',
+    //   alias: '%',
+    //   connectionPoints: {
+    //     R1: 'R1',
+    //     R2: 'R2',
+    //   },
+    // },
   };
 
   Object.values(nucleotideMonomers).forEach((leftNucleotide) => {
@@ -624,7 +643,7 @@ test.describe('Connection rules for Nucleotide monomers: ', () => {
                *  4. Validate canvas (connection should appear)
                */
               test(`Case3: Cnnct ${leftNucleotideConnectionPoint} to ${rightPeptideConnectionPoint} of Nuc(${leftNucleotide.alias}) and Pept(${rightPeptide.alias})`, async () => {
-                test.setTimeout(20000);
+                test.setTimeout(40000);
 
                 await loadTwoMonomers(page, leftNucleotide, rightPeptide);
 
@@ -856,7 +875,7 @@ test.describe('Connection rules for Nucleotide monomers: ', () => {
        *  4. Validate canvas (connection should appear)
        */
       test(`Case5: Cnnct Center to Center of Nucleotide(${leftNucleotide.alias}) and Peptide(${rightPeptide.alias})`, async () => {
-        test.setTimeout(20000);
+        test.setTimeout(40000);
 
         await loadTwoMonomers(page, leftNucleotide, rightPeptide);
 
@@ -1548,7 +1567,7 @@ test.describe('Connection rules for Nucleotide monomers: ', () => {
                *  4. Validate canvas (connection should appear)
                */
               test(`Case11: Cnnct ${leftNucleotideConnectionPoint} to ${rightBaseConnectionPoint} of Nuc(${leftNucleotide.alias}) and Base(${rightBase.alias})`, async () => {
-                test.setTimeout(20000);
+                test.setTimeout(40000);
 
                 /* In order to fix problem with label renderer (one pixel shift) 
                    we have to try to reload page
@@ -1599,7 +1618,7 @@ test.describe('Connection rules for Nucleotide monomers: ', () => {
        *  4. Validate canvas (connection should appear)
        */
       test(`Case12: Cnnct Center to Center of Nucleotide(${leftNucleotide.alias}) and Base(${rightBase.alias})`, async () => {
-        test.setTimeout(20000);
+        test.setTimeout(40000);
 
         await loadTwoMonomers(page, leftNucleotide, rightBase);
 

diff --git a/...nomers-Cas-03b79-r-of-Nucleotide-R1---Left-only-and-Base-W-1-chromium-linux.png b/...nomers-Cas-03b79-r-of-Nucleotide-R1---Left-only-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-0803f-R2-to-R1-of-Nuc-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-0803f-R2-to-R1-of-Nuc-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-0a075-R1-to-R1-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-0a075-R1-to-R1-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-0e473-R1-to-R2-of-Nuc-R1---Left-only-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-0e473-R1-to-R2-of-Nuc-R1---Left-only-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-109f3-r-of-Nucleotide-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-109f3-r-of-Nucleotide-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-17ed3-R1-to-R2-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-17ed3-R1-to-R2-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-1af70-R1-to-R1-of-Nuc-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-1af70-R1-to-R1-of-Nuc-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-3bf30-f-Nucleotide-R1-R2---R3-gap-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-3bf30-f-Nucleotide-R1-R2---R3-gap-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-41ff1--of-Nucleotide-R2---Right-only-and-Base-W-1-chromium-linux.png b/...nomers-Cas-41ff1--of-Nucleotide-R2---Right-only-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-48a0b-R3-to-R1-of-Nuc-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-48a0b-R3-to-R1-of-Nuc-R2-R3---R1-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-4cab7-R3-to-R2-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-4cab7-R3-to-R2-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-4d468-2-to-R1-of-Nuc-R2---Right-only-and-Base-W-1-chromium-linux.png b/...nomers-Cas-4d468-2-to-R1-of-Nuc-R2---Right-only-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-541e6-f-Nucleotide-R1-R3---R2-gap-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-541e6-f-Nucleotide-R1-R3---R2-gap-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-5c349-nter-of-Nucleotide-R1-R2-R3-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-5c349-nter-of-Nucleotide-R1-R2-R3-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-5e6c7-R1-to-R2-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-5e6c7-R1-to-R2-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-60eb7-R1-to-R1-of-Nuc-R1---Left-only-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-60eb7-R1-to-R1-of-Nuc-R1---Left-only-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-626af-R2-to-R2-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-626af-R2-to-R2-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-65373-R1-to-R1-of-Nuc-R1---Left-only-and-Base-W-1-chromium-linux.png b/...nomers-Cas-65373-R1-to-R1-of-Nuc-R1---Left-only-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-66118-2-to-R1-of-Nuc-R2---Right-only-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-66118-2-to-R1-of-Nuc-R2---Right-only-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-8b815-r-of-Nucleotide-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-8b815-r-of-Nucleotide-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-8c552--Center-of-Nucleotide-R1-R2-R3-and-Base-W-1-chromium-linux.png b/...nomers-Cas-8c552--Center-of-Nucleotide-R1-R2-R3-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-9ceb7-r-of-Nucleotide-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-9ceb7-r-of-Nucleotide-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-a00f4-R2-to-R1-of-Nuc-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-a00f4-R2-to-R1-of-Nuc-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-b324d--Nucleotide-R2---Right-only-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-b324d--Nucleotide-R2---Right-only-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-b5d86-R2-to-R2-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-b5d86-R2-to-R2-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-ba8f6-R1-to-R1-of-Nuc-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-ba8f6-R1-to-R1-of-Nuc-R1-R2---R3-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-c11ad-R3-to-R2-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-c11ad-R3-to-R2-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-c351e-R3-to-R1-of-Nuc-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png b/...nomers-Cas-c351e-R3-to-R1-of-Nuc-R1-R3---R2-gap-and-Base-W-1-chromium-linux.png
diff --git a/...nomers-Cas-c4fac-R1-to-R1-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-c4fac-R1-to-R1-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-c9b23-f-Nucleotide-R2-R3---R1-gap-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-c9b23-f-Nucleotide-R2-R3---R1-gap-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-c9fc1-R3-to-R1-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-c9fc1-R3-to-R1-of-Nuc-R1-R3---R2-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-ca21d-f-Nucleotide-R1---Left-only-and-Peptide-J-1-chromium-linux.png b/...nomers-Cas-ca21d-f-Nucleotide-R1---Left-only-and-Peptide-J-1-chromium-linux.png
diff --git a/...nomers-Cas-d6597-R2-to-R1-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-d6597-R2-to-R1-of-Nuc-R1-R2---R3-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-dcb53-R3-to-R1-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-dcb53-R3-to-R1-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-f383e-R2-to-R1-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-f383e-R2-to-R1-of-Nuc-R2-R3---R1-gap-and-Pept-J-1-chromium-linux.png
diff --git a/...nomers-Cas-f57ae-2-to-R2-of-Nuc-R2---Right-only-and-Pept-J-1-chromium-linux.png b/...nomers-Cas-f57ae-2-to-R2-of-Nuc-R2---Right-only-and-Pept-J-1-chromium-linux.png
diff --git a/...-monomers-Case11-Cnnct-R1-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png b/...-monomers-Case11-Cnnct-R1-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png
diff --git a/...-monomers-Case11-Cnnct-R2-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png b/...-monomers-Case11-Cnnct-R2-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png
diff --git a/...-monomers-Case11-Cnnct-R3-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png b/...-monomers-Case11-Cnnct-R3-to-R1-of-Nuc-R1-R2-R3-and-Base-W-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R1-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R1-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R1-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R1-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R2-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R2-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R2-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R2-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R3-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R3-to-R1-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png
diff --git a/...e-monomers-Case3-Cnnct-R3-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png b/...e-monomers-Case3-Cnnct-R3-to-R2-of-Nuc-R1-R2-R3-and-Pept-J-1-chromium-linux.png