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Update README.md
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emmaewade authored Jun 26, 2023
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Run the workflow with the same commands as above. This time they will be submitted to your job manager.

A few example commands are available in *workflow/testing-taxon-ids.sh* for practice.
A few example commands are available in *workflow/testing-commands.sh* for practice.

## Output
After the workflow parses taxonomies (if necessary), download GBFF files, processes GFF and FASTA files, and runs ABySS and Roary, a number of files and directories will be created in the output directory results/*outname*.
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