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fix: correctly define unit type when isolation distances are computed
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,122 @@ | ||
| function unitType = bc_getQualityUnitType(param, qMetric) | ||
| % JF, Classify units into good/mua/noise/non-somatic | ||
| % ------ | ||
| % Inputs | ||
| % ------ | ||
| % | ||
| % ------ | ||
| % Outputs | ||
| % ------ | ||
| if param.computeDistanceMetrics && ~isnan(param.isoDmin) && param.computeDrift && param.extractRaw | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
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| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.signalToNoiseRatio >= param.minSNR &... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & qMetric.maxDriftEstimate <= param.maxDrift & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.isoD >= param.isoDmin &... | ||
| qMetric.Lratio <= param.lratioMax & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
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||
| elseif param.computeDistanceMetrics && ~isnan(param.isoDmin) && param.computeDrift | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
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||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian' <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & ... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & qMetric.maxDriftEstimate <= param.maxDrift & ... | ||
| qMetric.isoD >= param.isoDmin &... | ||
| qMetric.Lratio <= param.lratioMax & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
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||
| elseif param.computeDrift && param.extractRaw | ||
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| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
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| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.signalToNoiseRatio >= param.minSNR &... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & qMetric.maxDriftEstimate <= param.maxDrift & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
|
||
| elseif param.computeDistanceMetrics && ~isnan(param.isoDmin) && param.extractRaw | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
|
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||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.signalToNoiseRatio >= param.minSNR &... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & isnan(unitType)& ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.isoD >= param.isoDmin &... | ||
| qMetric.Lratio <= param.lratioMax & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
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||
| elseif param.computeDrift | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
|
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||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian' <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & ... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & qMetric.maxDriftEstimate <= param.maxDrift & ... | ||
| isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
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||
| elseif param.computeDistanceMetrics && ~isnan(param.isoDmin) | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
|
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||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & ... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & ... | ||
| qMetric.isoD >= param.isoDmin &... | ||
| qMetric.Lratio <= param.lratioMax & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
|
||
| elseif param.extractRaw | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.rawAmplitude > param.minAmplitude & qMetric.signalToNoiseRatio >= param.minSNR &... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
|
||
| else | ||
| unitType = nan(length(qMetric.percentageSpikesMissing_gaussian), 1); | ||
| unitType(qMetric.nPeaks > param.maxNPeaks | qMetric.nTroughs > param.maxNTroughs | ... | ||
| qMetric.spatialDecaySlope >= param.minSpatialDecaySlope | qMetric.waveformDuration_peakTrough < param.minWvDuration |... | ||
| qMetric.waveformDuration_peakTrough > param.maxWvDuration | qMetric.waveformBaselineFlatness >= param.maxWvBaselineFraction) = 0; % NOISE | ||
| unitType(qMetric.isSomatic ~= param.somatic & isnan(unitType)) = 3; % NON-SOMATIC | ||
| unitType(qMetric.percentageSpikesMissing_gaussian <= param.maxPercSpikesMissing & qMetric.nSpikes > param.minNumSpikes & ... | ||
| qMetric.fractionRPVs_estimatedTauR <= param.maxRPVviolations & ... | ||
| qMetric.presenceRatio >= param.minPresenceRatio & isnan(unitType)) = 1; % SINGLE SEXY UNIT | ||
| unitType(isnan(unitType)) = 2; % MULTI UNIT | ||
|
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||
| end |
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