also output labels .tsv file

emilyasterjones · Sep 12, 2023 · 091a0b6 · 091a0b6
1 parent fa45e67
commit 091a0b6
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Showing 2 changed files with 15 additions and 5 deletions.
diff --git a/bc_qualityMetrics_pipeline.asv b/bc_qualityMetrics_pipeline.asv
@@ -78,13 +78,17 @@ original_id_we_want_to_load = 0;
 number_of_spikes_for_this_cluster = qMetric.nSpikes(qMetric.phy_clusterID == original_id_we_want_to_load);
 
 
-%% get unit labels 
+%% example: get unit labels 
 % the output of `uunitType = bc_getQualityUnitType(param, qMetric);` gives
-% the unitType in a number format. 1 means good units, 2 means mua units, 3
+% the unitType in a number format. 1 inidicates good units, 2 inidicates mua units, 3
+% indicates non-somatic units and 0 indicates noise units (see below) 
 % 
 goodUnits = unitType == 1;
 muaUnits = unitType == 2;
 noiseUnits = unitType == 0;
 nonSomaticUnits = unitType == 3; 
 
+% example: get all good units number of spikes
+all_good_units_number_of_spikes = qMetric.nSpikes(goodUnits);
 
+% (for use with another language: output a .tsv file of labels. You can then simply load t) 
diff --git a/bc_qualityMetrics_pipeline.m b/bc_qualityMetrics_pipeline.m
@@ -78,15 +78,21 @@
 number_of_spikes_for_this_cluster = qMetric.nSpikes(qMetric.phy_clusterID == original_id_we_want_to_load);
 
 
-%% get unit labels 
+%% example: get unit labels 
 % the output of `uunitType = bc_getQualityUnitType(param, qMetric);` gives
 % the unitType in a number format. 1 inidicates good units, 2 inidicates mua units, 3
 % indicates non-somatic units and 0 indicates noise units (see below) 
-% 
+
 goodUnits = unitType == 1;
 muaUnits = unitType == 2;
 noiseUnits = unitType == 0;
 nonSomaticUnits = unitType == 3; 
 
 % example: get all good units number of spikes
-all_good_units_number_of_spikes = qMetric.nSpikes(goodUnits);
+all_good_units_number_of_spikes = qMetric.nSpikes(goodUnits);
+
+% (for use with another language: output a .tsv file of labels. You can then simply load this) 
+label_table = table(unitType);
+writetable(label_table,[savePath filesep 'templates._bc_unit_labels.tsv'],'FileType', 'text','Delimiter','\t');  
+
+