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🔭 I’m a HDRUK-Turing Wellcome PhD student at UCL. I work on ML and geostatistics for cancer spatial biology.
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Previously I have worked on multi-omic integration at BenevolentAI.
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I have created the Python repositories XOmiVAE, SpottedPy and a graph machine learning framework for quantifying cell plasticity coming soon
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I have also worked on EMT-LLM, CancerGOArest framework and EMT quantification in bulk data
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My publications can be found here: Google scholar profile
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📫 How to reach me:
- email: ellwithnell@gmail.com
- linkedin: in/eloisewithnell
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secrierlab/SpottedPy
secrierlab/SpottedPy PublicHotspot cluster distance analysis in spatial transcriptomic data
Jupyter Notebook 33
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OmiEmbed
OmiEmbed PublicForked from zhangxiaoyu11/OmiEmbed
Multi-task deep learning framework for multi-omics data analysis
Python 1
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hover_net
hover_net PublicForked from vqdang/hover_net
Simultaneous Nuclear Instance Segmentation and Classification in H&E Histology Images.
Python
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kaishumason/NicheDE
kaishumason/NicheDE PublicNicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
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