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functionalise manuscript code in SM3 #29

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egouldo opened this issue Nov 17, 2023 · 4 comments · Fixed by #62
Open
3 of 10 tasks

functionalise manuscript code in SM3 #29

egouldo opened this issue Nov 17, 2023 · 4 comments · Fixed by #62
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documentation feature a feature request or enhancement
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Functionalise cod...

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@egouldo
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egouldo commented Nov 17, 2023 •
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  • fit_MA_mv
  • plot_forest
  • plot_forest_2 (and what's the difference)?
  • consider adding create_model_workflow, could wish to leave in manuscript
  • possibly_check_convergence_glm
  • plot_model_means_RE
  • walk_plot_effects_diversity
  • logged Euc analysis
  • Any calls to parameters::parameters to be added into make_viz()
  • add multivariate model fun and execution Mv multivariate MA code into ManyEcoEvo and update ManyAnalysts#44
@egouldo egouldo self-assigned this Nov 17, 2023
egouldo added a commit that referenced this issue Nov 17, 2023
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#29 add fit_MA_mv() and document
f4bd4b8
@egouldo egouldo mentioned this issue Jul 29, 2024
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egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 update fit_MA_mv
1b61cf3 
- rm duplicate fn added to fit_metafor_mv on other branch
- update roxygen blocks
egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 regenerate pkg man
c5dc0e2
egouldo added a commit to egouldo/ManyAnalysts that referenced this issue Jul 29, 2024
@egouldo
#42 rm functions from ManyAnalysts after egouldo/ManyEcoEvo#29
a968e27
@egouldo egouldo mentioned this issue Jul 29, 2024
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egouldo added a commit that referenced this issue Jul 29, 2024
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#29 rm duplicate creation of fn fit_MA_mv()
1bc6fb5
@egouldo egouldo mentioned this issue Jul 29, 2024
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@egouldo egouldo linked a pull request Jul 29, 2024 that will close this issue
Functionalise fit_MA_mv #29 #62
Merged
egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
Merge pull request #62 from egouldo/29-functionalise-ms-sm3
a471343 
Functionalise fit_MA_mv #29
egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 update fit_MA_mv
97c8188 
- rm duplicate fn added to fit_metafor_mv on other branch
- update roxygen blocks
egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 regenerate pkg man
2efd57a
egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 rm duplicate creation of fn fit_MA_mv()
82d624e
@egouldo egouldo reopened this Jul 29, 2024
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egouldo commented Jul 29, 2024 •
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  • fit_MA_mv() application for yi Eucs to be shifted into ManyEcoEvo (requires back-transformation of data)

egouldo added a commit that referenced this issue Jul 29, 2024
@egouldo
#29 apply multivar regression with conditional filters within meta_an…
be56e37 
…alyse_datasets
@egouldo egouldo pinned this issue Jul 29, 2024
egouldo added a commit that referenced this issue Jul 29, 2024
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#29 extract parameters from multivariate model
5b4e398
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 update targets pipeline after be56e37
9da8675 
- supply filter variables
- supply explicit NULL in yi application
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 provide default NULL argument for filter_vars
a51feac
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 comment out unused fn definition
b5576b6
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
- #29 provide character vector of names to join_by()
6c8b195 
- #29 extract and parse symbols to group_by
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 bug fixes, add cli output to fit_multivar_MA
4eaacc6 
- add check that expected columns exist in input data
- Output current grouping variables
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 fix incorrect join method
aac5c51 
(was resulting in tibbles in list-column rather than list-column of models)
egouldo added a commit that referenced this issue Jul 31, 2024
@egouldo
#29 replace any NULL vals in list-col with NA
75cdaa8 
- was causing problems for `map_if()` predicate check expressions in `make_viz()`
egouldo added a commit that referenced this issue Jul 31, 2024
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#29 use same approach as fit_multivar_MA to maintain model objects in…
d379ca1 
… global env
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egouldo commented Jul 31, 2024

[ ] fit_MA_mv() application for yi Eucs to be shifted into ManyEcoEvo (requires back-transformation of data)

Leave for now, as per #66.

egouldo added a commit that referenced this issue Jul 31, 2024
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#29 rm whitespace
a7b66f3
egouldo added a commit that referenced this issue Jul 31, 2024
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#29 fix bug where review_data not unnested for yi datasets
e5b450f
egouldo added a commit that referenced this issue Jul 31, 2024
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#63 #29 update documenation
51fa1e0
egouldo added a commit that referenced this issue Jul 31, 2024
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rebuild targets after #29 #63 changes
be395c0
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egouldo commented Aug 5, 2024

See #67 errors introduced

egouldo added a commit that referenced this issue Aug 5, 2024
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Add lme4 to targets #29 #67
cabbb46
egouldo added a commit that referenced this issue Aug 5, 2024
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Rebuild targets pipeline and package #29 #80
b13d170
@egouldo egouldo mentioned this issue Aug 7, 2024
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@egouldo egouldo added feature a feature request or enhancement and removed enhancement labels Aug 8, 2024
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egouldo commented Aug 10, 2024

See #67 errors introduced

That's been fixed now.

@egouldo egouldo unpinned this issue Sep 6, 2024
@egouldo egouldo mentioned this issue Sep 17, 2024
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Functionalise fit_MA_mv #29 egouldo/ManyEcoEvo
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