RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Pipeline to fetch metadata and raw FastQ files from public databases

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Assembly and intrahost/low-frequency variant calling for viral samples

WtP: Phage identification via nextflow and docker or singularity

Nextflow pipeline for analysis of direct RNA Nanopore reads

Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.

A nextflow pipeline to perform state-of-the-art genome-wide association studies.

k-mer similarity analysis pipeline