rename to VegSeasons

.github/backup/Documenter.yml

@@ -0,0 +1,20 @@
+name: Documenter
+on:
+  push:
+    branches: [master, main]
+    tags: [v*]
+  pull_request:
+    branches: [master, main]
+jobs:
+  Documenter:
+    name: Documentation
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v3
+      - uses: julia-actions/julia-buildpkg@latest
+      - uses: julia-actions/julia-docdeploy@latest
+        env:
+          RASTERDATASOURCES_PATH: ".."
+          GKSwstype: "100"
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+          DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}

.github/workflows/CI.yml

@@ -0,0 +1,40 @@
+# https://github.com/Alexander-Barth/NCDatasets.jl/blob/master/.github/workflows/ci.yml
+name: CI
+on:
+  - push
+  - pull_request
+jobs:
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          # - '1.3'
+          - '1'
+          # - 'nightly'
+        os:
+          - ubuntu-latest
+          - macOS-latest
+          # - windows-latest
+        arch:
+          - x64
+    steps:
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v1
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
+      - uses: julia-actions/julia-buildpkg@latest
+      - run: |
+          git config --global user.name Tester
+          git config --global user.email te@st.er
+      - uses: julia-actions/julia-runtest@latest
+        continue-on-error: ${{ matrix.version == 'nightly' }}
+
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v3
+        with:
+          file: lcov.info

.github/workflows/CompatHelper.yml

@@ -0,0 +1,24 @@
+name: CompatHelper
+
+on:
+  schedule:
+    - cron: '15 23 */4 * *'
+
+jobs:
+  CompatHelper:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        julia-version: [1.2.0]
+        julia-arch: [x86]
+        os: [ubuntu-latest]
+    steps:
+      - uses: julia-actions/setup-julia@latest
+        with:
+          version: ${{ matrix.julia-version }}
+      - name: Pkg.add("CompatHelper")
+        run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
+      - name: CompatHelper.main()
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/TagBot.yml

@@ -0,0 +1,18 @@
+# https://github.com/JuliaRegistries/TagBot
+name: TagBot
+on:
+  issue_comment:
+    types:
+      - created
+  workflow_dispatch:
+jobs:
+  TagBot:
+    if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'
+    runs-on: ubuntu-latest
+    steps:
+      - uses: JuliaRegistries/TagBot@v1
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
+          # Edit the following line to reflect the actual name of the GitHub Secret containing your private key
+          ssh: ${{ secrets.DOCUMENTER_KEY }}
+          # ssh: ${{ secrets.NAME_OF_MY_SSH_PRIVATE_KEY_SECRET }}

Project.toml

@@ -1,4 +1,4 @@
-name = "FindPeaks2"
+name = "VegSeasons"
 uuid = "7ffb45d2-0618-4371-ac45-d24d5e1e2ebc"
 authors = ["Dongdong Kong <kongdd@users.noreply.github.com>"]
 version = "0.1.0"

README.md

@@ -0,0 +1,8 @@
+# VegSeasons.jl
+
+[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://kongdd.github.io/nlminb.jl/stable)
+[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://kongdd.github.io/nlminb.jl/dev)
+[![CI](https://github.com/eco-hydro/VegSeasons.jl/actions/workflows/CI.yml/badge.svg)](https://github.com/eco-hydro/VegSeasons.jl/actions/workflows/CI.yml)
+[![Codecov](https://codecov.io/gh/eco-hydro/VegSeasons.jl/branch/master/graph/badge.svg)](https://codecov.io/gh/eco-hydro/VegSeasons.jl/tree/master)
+
+> Dongdong Kong

scripts/ex-findpeaks_01.qmd

@@ -1,25 +1,12 @@
----
-title: "findpeaks"
-format: html
-code-line-numbers: true
----
-
 # 加载包与数据
 ```{julia}
-using Findpeaks
+using VegSeasons
 using Ipaper
 # using Dates
 using Plots
 using Statistics: quantile
+using RTableTools
 
-# 这一个函数，负担极重
-function write_fig2(file="Rplot.pdf", width=10, height=5; show=true)
-  plot!(size=(width * 72, height * 72))
-  savefig(file)
-  if show
-    show_file(file)
-  end
-end
 # pwd()
 df = fread("data-raw/02475000.csv")
 ```
@@ -31,20 +18,22 @@ x = df.q
 date = df.date
 
 TRS = quantile(x, 0.8)
-df_peaks = findpeaks(x)
-d2 = filter_peaks(df_peaks, minpeakheight=TRS, A_min=TRS*0.1, minpeakdistance=3)
+@time d_peaks = findpeaks(x)
+@time d_peaks = findpeaks_allen(x)
+
+d2 = filter_peaks(d_peaks, minpeakheight=TRS, A_min=TRS * 0.1, minpeakdistance=3)
 # info = @pipe filter(d -> !(d.status ∈ ["minpeakheight", "minpeakdistance"][1:1]), d2) 
 d2
 # fwrite(info, "peak_info.csv")
-  # _[_.status .== "", :]
+# _[_.status .== "", :]
 
 # d_peaks = @pipe df_peaks |> 
 #   filter(d -> d.val_peak >= TRS && d.h_min >= TRS*0.1, _)
 
 # print(d_peaks)
 
-# t_peak = date[d_peaks.pos_peak];
-# val_peak = d_peaks.val_peak;
+t_peak = date[d_peaks.pos_peak];
+val_peak = d_peaks.val_peak;
 ```
 
 
@@ -68,5 +57,5 @@ scatter!(p, t_peak, val_peak,
             label="Peak",
             markercolor=:red,
             markershape=:circle)
-write_fig2("Rplot.pdf")
+write_fig("Rplot.pdf")
 ```

src/FindPeaks2.jl → src/VegSeasons.jl

@@ -1,9 +1,11 @@
-module FindPeaks2
+module VegSeasons
 
 using DataFrames: DataFrame, sort!, nrow
 using Statistics: mean, median
 
 
 include("findpeaks.jl")
+include("findpeaks_allen.jl")
+
 
 end # module FindPeaks2