Here we present a method to plot the outputs of RFMIX version 2

PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank

The nimble & robust variant annotator

topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire geno…

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Cleaning process based on the the process performed in https://doi.org/10.1002/ana.26051

CoMorMent-Containers

Segmented HAPlotype Estimation and Imputation Tool

Causal Mixture Model for GWAS summary statistics

A Python-based EGA download client

Fast analysis and visualization of latent clusters in population genetic data

Predictor for technical bias in DNA variants in NGS data

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"

Rapid population clustering with autoencoders

Polygenic prediction via continuous shrinkage priors

GWAS QC, PCA, haplotype phasing, genotype imputation

Statistical properties of polygenic risk scores

Segmented HAPlotype Estimation and Imputation Tool

Global ancestry pipeline

Primary repository for efforts and analyses of the Neuropsychiatric Genetics in African Populations

Hail batch pipeline and scripts for local ancestry inference