Skip to content

Questions about confidence score #154

@Kevis9

Description

@Kevis9

Hi, thanks for the insightful work! Now I am using SingleR to annotate query data based on reference data. I wonder how to get the confidence score of the predicted cell type.

Following is my core code:

pred <- SingleR(test = query_data, ref = ref_data, labels = ref_label)
pred <- pred$labels
return (pred)

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions