Easily Create Interactive Oncoplots

ConsensusCruncher is a tool that suppresses errors in next-generation sequencing data by using unique molecular identifiers (UMIs) to amalgamate reads derived from the same DNA template into a cons…

A command line tool to rename media files based on titles from IMDb.

The disTIL immunoprofiling toolkit

A standalone end-to-end data analysis pipeline for Duplex Sequencing

R package for Medulloblastoma subtype classification

mity: A highly sensitive mitochondrial variant analysis pipeline for whole genome sequencing data

Reference-free duplex sequencing pipeline.

R package containing useful functions for mutational signature analysis

Bash Line Editor―a line editor written in pure Bash with syntax highlighting, auto suggestions, vim modes, etc. for Bash interactive sessions.

An htmlwidget version of igv, for RStudio and Shiny apps

Discover Mutation Induced Splice Sites

Natural Language Search and Analysis of High Dimensional Genomic Data

Extremely fast Variant Call Format annotation

Mapping genes/mutations to drugs used in clinical trials in the Australian New Zealand Clinical Trials Registry, using R

TransVar - multiway annotator for precision medicine

a pileup library that embraces the huge

Stupid Simple Structural Variant View

SplitThreader has moved into Ribbon!

This repo provides tools to convert ClinVar data into a tab-delimited flat file, and also provides that resulting tab-delimited flat file.

A genome browser designed for complex structural variants and long reads.

GRIDSS: the Genomic Rearrangement IDentification Software Suite

Tools for participants in the ICGC-TCGA DREAM Mutation Calling challenge

VarDict Java port

Precision HLA typing from next-generation sequencing data

VarSim: A high-fidelity simulation validation framework for high-throughput genome sequencing with cancer applications

Mapping scheme test software, to be extended to sequence graphs.