Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
ethanmoyer authored Apr 11, 2021
1 parent a18651e commit 0adff7f
Showing 1 changed file with 17 additions and 8 deletions.
25 changes: 17 additions & 8 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -6,14 +6,23 @@
- Data set is through Protein Data Bank through API calls (https://www.wwpdb.org/)

## Tasks
[] - Define protein structures of interest, search space, and data base focus \
[] - Build database using list of four-letter protein structure IDs \
[] - Download proteins from PDB and encode protein structures into grid structure \
[] - Determine feature set based on encoding and decide if any more features should be included \
[] - Train GAN/DCGAN on encoded protein structures \
[] - Perform experiemnts/gather results to determine how well the model performed \
[] - Explore the explainability of the model \
[] - Generate figures for paper and sample test cases to illistrate how the model performs on an individual protein structure
[] - Define protein structures of interest, search space, and data base focus () \
[] - Build database using list of four-letter protein structure IDs () \
[] - Download proteins from PDB and encode protein structures into grid structure (Ethan, ) \
[] - Determine feature set based on encoding and decide if any more features should be included () \
[] - Train GAN/DCGAN on encoded protein structures () \
[] - Perform experiemnts/gather results to determine how well the model performed () \
[] - Explore the explainability of the model () \
[] - Generate figures for paper and sample test cases to illistrate how the model performs on an individual protein structure ()

## Papper section
- Abstract
- Introduction
- Related work
- Methods
- Experiments/Results
- Conclusion
- Future work

## Agenda

Expand Down

0 comments on commit 0adff7f

Please sign in to comment.