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Updating MKL #2867

Merged
merged 19 commits into from
Mar 18, 2019
Merged

Updating MKL #2867

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022512d
Updating ml.net to use the mlnetdep 0.0.0.9 nuget package.
singlis Mar 5, 2019
39c8915
- Enabled NumberOfThreads parameter
singlis Mar 6, 2019
63ca59a
- Update for mac build
singlis Mar 6, 2019
88c986f
- Forcing libomp to create a link
singlis Mar 6, 2019
719835b
Merge remote-tracking branch 'origin/master' into singlis/mkl-update
singlis Mar 6, 2019
6413c7a
Apple test for building...
singlis Mar 6, 2019
8337e77
- Moving the install of libomp to happen before build for Apple
singlis Mar 6, 2019
b2bde4f
- Updating from feedback
singlis Mar 6, 2019
24e65d3
Merge remote-tracking branch 'origin/master' into singlis/mkl-update
singlis Mar 13, 2019
c1b2565
- Updating machine images
singlis Mar 13, 2019
dd99735
- Updating docker images
singlis Mar 13, 2019
61822db
Merge remote-tracking branch 'origin/master' into singlis/mkl-update
singlis Mar 14, 2019
6cdad9d
- Updating centos container, addressing feedback
singlis Mar 14, 2019
3a9e990
-fixing yml file.
singlis Mar 14, 2019
6bcf592
-Minor cmakefile cleanup
singlis Mar 15, 2019
b9ba70d
Merge remote-tracking branch 'origin/master' into singlis/mkl-update
singlis Mar 15, 2019
f4e528d
- NumberOfThreads defaults to Environment.ProcessorCount, comment upd…
singlis Mar 15, 2019
1b7f951
- Setting SymSSGD test to use 1 thread for consistency
singlis Mar 16, 2019
3247bde
Merge remote-tracking branch 'origin/master' into singlis/mkl-update
singlis Mar 18, 2019
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4 changes: 2 additions & 2 deletions .vsts-dotnet-ci.yml
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Expand Up @@ -5,10 +5,10 @@
resources:
containers:
- container: CentosContainer
image: microsoft/dotnet-buildtools-prereqs:centos-7-b46d863-20180719033416
image: mcr.microsoft.com/dotnet-buildtools/prereqs:centos-7-mlnet-8bba86b-20190314145033

- container: UbuntuContainer
image: microsoft/dotnet-buildtools-prereqs:ubuntu-16.04-10fcdcf-20190208200917
image: mcr.microsoft.com/dotnet-buildtools/prereqs:ubuntu-16.04-mlnet-207e097-20190312152303

phases:
- template: /build/ci/phase-template.yml
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2 changes: 1 addition & 1 deletion build/Dependencies.props
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Expand Up @@ -15,7 +15,7 @@
<GoogleProtobufPackageVersion>3.5.1</GoogleProtobufPackageVersion>
<LightGBMPackageVersion>2.2.3</LightGBMPackageVersion>
<MicrosoftMLOnnxRuntimePackageVersion>0.2.1</MicrosoftMLOnnxRuntimePackageVersion>
<MlNetMklDepsPackageVersion>0.0.0.7</MlNetMklDepsPackageVersion>
<MlNetMklDepsPackageVersion>0.0.0.9</MlNetMklDepsPackageVersion>
<ParquetDotNetPackageVersion>2.1.3</ParquetDotNetPackageVersion>
<SystemDrawingCommonPackageVersion>4.5.0</SystemDrawingCommonPackageVersion>
<SystemIOFileSystemAccessControl>4.5.0</SystemIOFileSystemAccessControl>
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6 changes: 3 additions & 3 deletions build/ci/phase-template.yml
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Expand Up @@ -33,13 +33,13 @@ phases:
${{ insert }}: ${{ parameters.customMatrixes }}
${{ insert }}: ${{ parameters.queue }}
steps:
- ${{ if eq(parameters.name, 'MacOS') }}:
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@eerhardt eerhardt Mar 6, 2019 •
edited by singlis
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Note - you are going to need to update the "official" build as well:

machinelearning/build/vsts-ci.yml

Lines 37 to 60 in 6f4e055

################################################################################
- phase: MacOS
################################################################################
variables:
BuildConfig: Release
OfficialBuildId: $(BUILD.BUILDNUMBER)
DOTNET_CLI_TELEMETRY_OPTOUT: 1
DOTNET_SKIP_FIRST_TIME_EXPERIENCE: 1
DOTNET_MULTILEVEL_LOOKUP: 0
queue:
name: DotNetCore-Build
demands:
- agent.os -equals Darwin
steps:
# Only build native assets to avoid conflicts.
- script: ./build.sh -buildNative -$(BuildConfig) -skipRIDAgnosticAssets
displayName: Build
- task: PublishBuildArtifacts@1
displayName: Publish macOS package assets
inputs:
pathToPublish: $(Build.SourcesDirectory)/bin/obj/packages
artifactName: PackageAssets
artifactType: container
#Resolved

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@singlis singlis Mar 6, 2019 •
edited
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thanks - ill update that as well. #Resolved

- script: brew update && brew install libomp && brew install mono-libgdiplus gettext && brew link gettext --force && brew link libomp --force
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libomp [](start = 44, length = 6)

do we still need to install libomp if we install it in vsts-ci.yml?

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I believe it does as Eric's comment earlier was to make sure to also add this to vsts-ci.yml. My impression is that the vsts-ci.yml is for the gated build (post merge) and vsts-ci.yml is separate from phase-template.yml, but its a good question. @eerhardt can you clarify? Thanks!

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they are 2 completely separate builds:

  1. For PR validation and post merge CI.
  2. For official build - which signs assemblies, publishes nuget packages and symbols, etc.

displayName: Install build dependencies
- script: $(_buildScript) -$(_configuration) -buildArch=$(_arch)
displayName: Build
- script: $(_buildScript) -- /t:DownloadExternalTestFiles /p:IncludeBenchmarkData=$(_includeBenchmarkData)
displayName: Download Benchmark Data
- ${{ if eq(parameters.name, 'MacOS') }}:
- script: brew update && brew install libomp mono-libgdiplus gettext && brew link gettext --force
displayName: Install runtime dependencies
- script: $(_buildScript) -$(_configuration) -runtests -coverage=$(_codeCoverage)
displayName: Run Tests.
- script: $(Build.SourcesDirectory)/Tools/dotnetcli/dotnet msbuild build/Codecoverage.proj /p:CodeCovToken=$(CODECOV_TOKEN)
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4 changes: 3 additions & 1 deletion build/vsts-ci.yml
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Expand Up @@ -5,7 +5,7 @@
resources:
containers:
- container: CentosContainer
image: microsoft/dotnet-buildtools-prereqs:centos-7-b46d863-20180719033416
image: mcr.microsoft.com/dotnet-buildtools/prereqs:centos-7-mlnet-8bba86b-20190314145033

phases:
################################################################################
Expand Down Expand Up @@ -48,6 +48,8 @@ phases:
demands:
- agent.os -equals Darwin
steps:
- script: brew update && brew install libomp && brew link libomp --force
displayName: Install build dependencies
# Only build native assets to avoid conflicts.
- script: ./build.sh -buildNative -$(BuildConfig) -skipRIDAgnosticAssets
displayName: Build
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5 changes: 4 additions & 1 deletion src/Microsoft.ML.Console/Microsoft.ML.Console.csproj
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Expand Up @@ -31,8 +31,11 @@
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="FactorizationMachineNative" />
<NativeAssemblyReference Include="MatrixFactorizationNative" />
<NativeAssemblyReference Include="LdaNative" />
<NativeAssemblyReference Include="SymSgdNative" />
<NativeAssemblyReference Include="SymSgdNative"/>
<NativeAssemblyReference Include="MklImports"/>
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

</Project>
5 changes: 3 additions & 2 deletions src/Microsoft.ML.Mkl.Components/SymSgdClassificationTrainer.cs
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Expand Up @@ -43,7 +43,7 @@ public sealed class Options : TrainerInputBaseWithLabel
{
/// <summary>
/// Degree of lock-free parallelism. Determinism not guaranteed if this is set to higher than 1.
/// Multi-threading is not supported currently.
/// The default value is the number of logical cores that are available on the system.
/// </summary>
[Argument(ArgumentType.AtMostOnce, HelpText = "Degree of lock-free parallelism. Determinism not guaranteed. " +
"Multi-threading is not supported currently.", ShortName = "nt")]
Expand Down Expand Up @@ -662,7 +662,8 @@ private TPredictor TrainCore(IChannel ch, RoleMappedData data, LinearModelParame
{
int numFeatures = data.Schema.Feature.Value.Type.GetVectorSize();
var cursorFactory = new FloatLabelCursor.Factory(data, CursOpt.Label | CursOpt.Features);
int numThreads = 1;
int numThreads = _options.NumberOfThreads ?? Environment.ProcessorCount;

ch.CheckUserArg(numThreads > 0, nameof(_options.NumberOfThreads),
"The number of threads must be either null or a positive integer.");

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31 changes: 26 additions & 5 deletions src/Native/SymSgdNative/CMakeLists.txt
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@@ -1,25 +1,46 @@
project (SymSgdNative)


set(SOURCES
SymSgdNative.cpp
)

find_library(MKL_LIBRARY MklImports HINTS ${MKL_LIB_PATH})
if(NOT WIN32)
if(APPLE)
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@eerhardt eerhardt Mar 15, 2019 •
edited by singlis
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Can we just put this in the if (NOT WIN32) section below? Instead of having 2 different "If not windows" sections? #Resolved

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Hi Eric, sorry I am not quite following. This has special handling for APPLE - adding this under "NOT WIN32" would include both apple and linux which is not the same result. There is also the ELSE clause which is what I want to execute for windows and linux. If I am misunderstanding let me know.

In reply to: 266134616 [](ancestors = 266134616)

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@eerhardt eerhardt Mar 15, 2019 •
edited by singlis
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Sorry - I should have been clearer:

if(APPLE)
    # CMake has support for OpenMP, however, Apple has a version of Clang
    # that does not support openMP out of the box. Therefore
    # these commands are added to sepcifically handle the Apple Clang scenario
    # If the LLVM version of clang is used for Apple builds, this can be removed
    # and the else condition can be used instead.
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xpreprocessor -fopenmp")
    SET(OPENMP_LIBRARY "omp")
    include_directories("/usr/local/opt/libomp/include")
    link_directories("/usr/local/opt/libomp/lib")
else()
    find_package(OpenMP)
    if (OPENMP_FOUND)
        SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
        SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
    endif()
endif()

find_library(MKL_LIBRARY MklImports HINTS ${MKL_LIB_PATH})

if(NOT WIN32)
    list(APPEND SOURCES ${VERSION_FILE_PATH})
    if(NOT APPLE)
        SET(CMAKE_SKIP_BUILD_RPATH  FALSE)
        SET(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
        SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
        SET(CMAKE_INSTALL_RPATH "$ORIGIN/")
    endif()
endif()

You see how there are now 2 separate "if" checks for not Windows and Not Apple?

We can combine this together into a single set of "if" conditions:

if(NOT WIN32)
    // Do common non-Windows
    if(APPLE)
        // Apple stuff
    else()
        // Do non-Apple stuff
    endif()
endif()
``` #Resolved

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Here is what I came up with -- its merged with the least amount of duplication. The line that was duplicated is this: list(APPEND SOURCES ${VERSION_FILE_PATH})

In reply to: 266144477 [](ancestors = 266144477)

# CMake has support for OpenMP, however, Apple has a version of Clang
# that does not support openMP out of the box. Therefore
# these commands are added to sepcifically handle the Apple Clang scenario
# If the LLVM version of clang is used for Apple builds, this can be removed
# and the else condition can be used instead.
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Xpreprocessor -fopenmp")
SET(OPENMP_LIBRARY "omp")
include_directories("/usr/local/opt/libomp/include")
link_directories("/usr/local/opt/libomp/lib")

list(APPEND SOURCES ${VERSION_FILE_PATH})
if(NOT APPLE)
else()
find_package(OpenMP)
if (OPENMP_FOUND)
SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
SET(CMAKE_EXE_LINKER_FLAGS "${CMAKE_EXE_LINKER_FLAGS} ${OpenMP_EXE_LINKER_FLAGS}")
endif()

if (NOT WIN32)
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list(APPEND SOURCES ${VERSION_FILE_PATH})
SET(CMAKE_SKIP_BUILD_RPATH FALSE)
SET(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
SET(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
SET(CMAKE_INSTALL_RPATH "$ORIGIN/")
endif()
endif()

find_library(MKL_LIBRARY MklImports HINTS ${MKL_LIB_PATH})

add_definitions(-DUSE_OMP)
add_library(SymSgdNative SHARED ${SOURCES} ${RESOURCES})
target_link_libraries(SymSgdNative PUBLIC ${MKL_LIBRARY})
target_link_libraries(SymSgdNative PUBLIC ${MKL_LIBRARY} PUBLIC ${OPENMP_LIBRARY})

if(APPLE)
set_target_properties(SymSgdNative PROPERTIES INSTALL_RPATH "@loader_path;@loader_path/${MKL_LIB_RPATH}}")
endif()

install_library_and_symbols (SymSgdNative)
install_library_and_symbols (SymSgdNative)
5 changes: 4 additions & 1 deletion src/Native/build.proj
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Expand Up @@ -72,7 +72,10 @@

<Copy SourceFiles="$(PackagesDir)mlnetmkldeps\$(MlNetMklDepsPackageVersion)\runtimes\$(PackageRid)\native\$(NativeLibPrefix)MklImports$(NativeLibExtension)"
DestinationFolder="$(NativeAssetsBuiltPath)" />


<Copy Condition="'$(OS)' == 'Windows_NT'" SourceFiles="$(PackagesDir)mlnetmkldeps\$(MlNetMklDepsPackageVersion)\runtimes\$(PackageRid)\native\libiomp5md$(NativeLibExtension)"
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@Ivanidzo4ka Ivanidzo4ka Mar 6, 2019 •
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Windows_NT [](start = 33, length = 10)

No support for Linux and MacOS? #Closed

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So this works on all platforms. For Linux and MacOS, we rely on openmp to be installed on the system.

In reply to: 262795888 [](ancestors = 262795888)

DestinationFolder="$(NativeAssetsBuiltPath)" />

<ItemGroup Condition="'$(UseIntrinsics)' != 'true'">
<NativePackageAsset Include="$(NativeAssetsBuiltPath)\$(NativeLibPrefix)CpuMathNative$(NativeLibExtension)"
RelativePath="Microsoft.ML.CpuMath\runtimes\$(PackageRid)\native" />
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3 changes: 2 additions & 1 deletion test/Microsoft.ML.Benchmarks/Microsoft.ML.Benchmarks.csproj
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Expand Up @@ -24,5 +24,6 @@
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>
</Project>
</Project>
3 changes: 2 additions & 1 deletion test/Microsoft.ML.Core.Tests/Microsoft.ML.Core.Tests.csproj
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Expand Up @@ -28,11 +28,12 @@
</ItemGroup>

<ItemGroup>
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Include="MklProxyNative" />
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="LdaNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

<!-- TensorFlow is 64-bit only -->
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1 change: 1 addition & 0 deletions test/Microsoft.ML.Functional.Tests/Microsoft.ML.Functional.Tests.csproj
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Expand Up @@ -38,6 +38,7 @@
<NativeAssemblyReference Include="SymSgdNative" />
<NativeAssemblyReference Include="MklProxyNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

<!-- TensorFlow is 64-bit only -->
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1 change: 1 addition & 0 deletions test/Microsoft.ML.OnnxTransformerTest/Microsoft.ML.OnnxTransformerTest.csproj
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Expand Up @@ -30,6 +30,7 @@

<ItemGroup>
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

</Project>
1 change: 1 addition & 0 deletions test/Microsoft.ML.Predictor.Tests/Microsoft.ML.Predictor.Tests.csproj
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Expand Up @@ -21,6 +21,7 @@
<NativeAssemblyReference Include="FactorizationMachineNative" />
<NativeAssemblyReference Include="SymSgdNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

</Project>
1 change: 1 addition & 0 deletions test/Microsoft.ML.StaticPipelineTesting/Microsoft.ML.StaticPipelineTesting.csproj
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Expand Up @@ -26,5 +26,6 @@
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="LdaNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>
</Project>
1 change: 1 addition & 0 deletions test/Microsoft.ML.Sweeper.Tests/Microsoft.ML.Sweeper.Tests.csproj
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Expand Up @@ -10,5 +10,6 @@
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>
</Project>
3 changes: 2 additions & 1 deletion test/Microsoft.ML.TestFramework/Microsoft.ML.TestFramework.csproj
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Expand Up @@ -19,9 +19,10 @@
<NativeAssemblyReference Include="LdaNative" />
<NativeAssemblyReference Include="FastTreeNative" />
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Include="MklProxyNative" />
<NativeAssemblyReference Include="FactorizationMachineNative" />
<NativeAssemblyReference Include="MatrixFactorizationNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>
</Project>
12 changes: 10 additions & 2 deletions test/Microsoft.ML.Tests/FeatureContributionTests.cs
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Expand Up @@ -157,14 +157,22 @@ public void TestSDCABinary()
public void TestSGDBinary()
{
TestFeatureContribution(ML.BinaryClassification.Trainers.SgdCalibrated(
new SgdCalibratedTrainer.Options { NumberOfThreads = 1 }),
new SgdCalibratedTrainer.Options()
{
NumberOfThreads = 1
}),
GetSparseDataset(TaskType.BinaryClassification, 100), "SGDBinary");
}

[Fact]
public void TestSSGDBinary()
{
TestFeatureContribution(ML.BinaryClassification.Trainers.SymbolicSgd(), GetSparseDataset(TaskType.BinaryClassification, 100), "SSGDBinary", 4);
TestFeatureContribution(ML.BinaryClassification.Trainers.SymbolicSgd(
new SymbolicSgdTrainer.Options()
{
NumberOfThreads = 1
}),
GetSparseDataset(TaskType.BinaryClassification, 100), "SSGDBinary", 4);
}

[Fact]
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1 change: 1 addition & 0 deletions test/Microsoft.ML.Tests/Microsoft.ML.Tests.csproj
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Expand Up @@ -38,6 +38,7 @@
<NativeAssemblyReference Include="SymSgdNative" />
<NativeAssemblyReference Include="MklProxyNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>

<!-- TensorFlow is 64-bit only -->
Expand Down
3 changes: 2 additions & 1 deletion test/Microsoft.ML.TimeSeries.Tests/Microsoft.ML.TimeSeries.Tests.csproj
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Expand Up @@ -13,5 +13,6 @@
<NativeAssemblyReference Include="CpuMathNative" />
<NativeAssemblyReference Include="MklProxyNative" />
<NativeAssemblyReference Include="MklImports" />
<NativeAssemblyReference Condition="'$(OS)' == 'Windows_NT'" Include="libiomp5md"/>
</ItemGroup>
</Project>
</Project>