RNA velocity estimation in Python

RNA Velocity generalized through dynamical modeling

CellRank: dynamics from multi-view single-cell data

The R Installation Manager

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

羊土社 実験医学増刊号「生命科学研究を加速する 機械学習（仮）」サンプルコード

Streamlit component to execute javascript code on the client side and get back the result

🪢 Open source LLM engineering platform: LLM Observability, metrics, evals, prompt management, playground, datasets. Integrates with LlamaIndex, Langchain, OpenAI SDK, LiteLLM, and more. 🍊YC W23

Comparison of methods for trajectory inference on single-cell data 🥇

TSCAN: Tools for Single-Cell ANalysis

Python package to perform enrichment analysis from omics data.

A tool for semi-automatic cell type classification

Accelerated genomics workflows in NextFlow

This repo contains a collection of Streamlit in Snowflake demos, tutorials, and examples

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

A quick and flexible single-cell RNA-seq processing framework on the cloud

GENIE3 (GEne Network Inference with Ensemble of trees) R-package

Re:VIEW is flexible document format/conversion system

Python project template for Snowpark development

Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

Annotation and Ranking of Structural Variation

A dbt package from SELECT to help you monitor Snowflake performance and costs

Web app for automated, systematic, and integrated RNA-seq differential expression analysis

Bioconductor package enrichTF: Transcription Factors Enrichment Analysis