Update DMC.Rmd

DMC.Rmd

@@ -35,7 +35,6 @@ Highly effective computational system biologist, with graduate and post-doctoral
 
 
 # Technical Skills
-
 Machine learning, multi omics data analytics, R/Bioconductor, keras, perl, Latex, python, MATLAB, awk, bash. Adept user of OS X/macOS, Unix. Familiarity with cloud computing architectures (AWS) and high performance computing environments.
 
 
@@ -49,10 +48,13 @@ B. Sc. in Biochemistry \hfill _2002_
 
 
 # Experience
+**<span style="font-size:1em;">Rheos Medicines</span>** \hfill _Boston, MA_  
+Senior Director, Computational Biology and Bioinformatics \hfill _November 2020 - Present_  
+
 **<span style="font-size:1em;">Wyss Institute @ Harvard University</span>** \hfill _Boston, MA_  
-Lead, Predictive BioAnalytics Initiative, Advanced Technology Team \hfill _July 2016 - Present_  
+Lead, Predictive BioAnalytics Initiative, Advanced Technology Team \hfill _July 2016 - November 2020_  
 
-I am currently the group lead of the Predictive BioAnalytics Initiative at the Wyss Institute, where I lead a team of computational biologists, computer scientists, and software engineers to address challenges in machine learning and biomedical data sciences, both in-house or thtough external collaborations. Some of the functions associated with the role include:
+As the group lead of the Predictive BioAnalytics Initiative at the Wyss Institute, I led a team of computational biologists, computer scientists, and software engineers to address challenges in machine learning and biomedical data sciences, both in-house or thtough external collaborations. Some of the functions associated with the role include:
 
  - Development and implementation of research strategy for the Initiative, focusin on enabling ML/DL/AI capabilities
  - Managing and mentoring staff scientists, post-doctoral fellows, graduate students, and interns
@@ -116,10 +118,12 @@ co-Investigator \hfill _9/1/20_
 co-PI \hfill _9/1/17_  
 
 
-
-
 # Publications
- - Bojar, D, Powers, RK, **Camacho, DM**, Collins, JJ (2020), Deep learning reveals glycan-mediated host-microbe interactions, _Cell Host & Microbe_ (_accepted_)
+ - Joanna R Dispirito, Mehmet G Badur, **Diogo M Camacho**, Aditi Chalishazar, Brian DeChristopher, Katie Sellers, Mya Steadman, Keng Soh, John Monroe, Andrew Long (2021), Allosteric Inhibition of MALT1 Is Efficacious in a Model of Chronic Graft-Versus-Host Disease and Modulates Immunometabolic Activation, _Blood_, 138, 3810
+ - Francesca S Gazzaniga, Diogo M Camacho, Meng Wu, Matheus F Silva Palazzo, Alexandre LM Dinis, Francis N Grafton, Mark J Cartwright, Michael Super, Dennis L Kasper, Donald E Ingber (2021), Harnessing Colon Chip technology to identify commensal bacteria that promote host tolerance to infection, _Frontiers in Cellular and Infection Microbiology_, 11, 105
+ - Megan M Sperry, Richard Novak, Vishal Keshari, Alexandre LM Dinis, Mark J Cartwright, Diogo M Camacho, Jean-François Paré, Michael Super, Michael Levin, Donald E Ingber (2021), Enhancers of host immune tolerance to bacterial infection discovered using linked computational and experimental approaches, _bioRxiv_
+ - Amir Bein, Cicely W Fadel, Ben Swenor, Wuji Cao, Rani K Powers, Diogo M Camacho, Arash Naziripour, Andrew W Parsons, Nina T LoGrande, Sanjay Sharma, Seongmin Kim, Sasan Jalili Firoozinezhad, Jennifer Grant, David T Breault, Junaid Iqbal, Asad Ali, Lee A Denson, Sean Ryan Moore, Rachelle Prantil-Baun, Girija Goyal, Donald E Ingber (2021), Nutritional deficiency recapitulates intestinal injury associated with environmental enteric dysfunction in patient-derived Organ Chips, medRxiv
+ - Bojar, D, Powers, RK, **Camacho, DM**, Collins, JJ (2020), Deep-Learning Resources for Studying Glycan-Mediated Host-Microbe Interactions, _Cell Host & Microbe_ (_accepted_)
  <!-- - Bojar, D, **Camacho, DM**, Collins, JJ (2019), Using natural language processing to learn the language of glycans, _Nature communications_ (_submitted_) -->
  - Valeri, J, Collins, KM, Ramesh, P, Alcantar, M, Lepe, BA, Lu, TK, **Camacho, DM** (2020), Sequence-to-function deep learning frameworks for engineered riboregulators, _Nature communications_ (_accepted_)
  - Jalili-Firoozinezhad, S, Gazzaniga, FS, Calamari, EL, **Camacho, DM**, Fadel, C, Nestor, B, Cronce, MJ, Tovaglieri, A, Levy, O, Gregory, KE, Breault, DT, Cabral, JMS, Kasper, DL, Novak, R, Ingber, DE (2019),	A complex human gut microbiome cultured in an anaerobic intestine-on-a-chip, _Nature Biomedical Engineering_, 3, 520-531 [[PubMed](https://www.ncbi.nlm.nih.gov/pubmed/31086325)]
@@ -140,8 +144,11 @@ co-PI \hfill _9/1/17_
 
 
 # Patents
+ - Novak, R, Jalili-Firoozinezhad, S, Gazzaniga, FS, Calamari, EL, **Camacho, DM**, Nestor, BA, Fadel, C, Cronce, ML, Kasper, DL, Ingber, DE, Bein, A, Complex Human Gut Microbiome Cultured in an Anaerobic Human Gut-on-A-Chip (_submitted_)
+ - Driggers, EM, Soh, K, **Camacho DM**, Transcriptional subseetting of patient cohorts based on metabolic pathway activity (_submitted_)
+ - Garruss, AS,  Church, GM, **Camacho, DM**, Riboregulators and methods of use thereof (_submitted_)
  - Soenksen, LR, **Camacho, DM**, Collins, KM, Angenent-Mari, NM, Garruss, AS, Collins, JJ, Church, GM, Method for deep learning for RNA synthetic biology (_submitted_)
  - Collins, JJ, Belenky, P, **Camacho, DM** (2015), Compositions and methods for treating fungal infections, WO2014130922A1 [[Link](https://patents.google.com/patent/WO2014130922A1/en)]
 
 # References
-References will be provided upon request.
+References will be provided upon request.