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Commits on Sep 14, 2017

• Merge branch 'master' into fix/consume-filename-or-parser

  standage

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• "Overload" cython consume methods with type introspection

  standage

  committed
  2e32025

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• Drop __future__ imports

  standage

  committed
  2c87d81

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Commits on Sep 2, 2017

• Fix up sandbox scripts

  camillescott

  committed
  3664a9f

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Commits on Jul 10, 2017

• Updates to correct-reads and error-correct-pass2 to use current khmer codebase

  

  Will Trimble

  committed
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Commits on Feb 15, 2017

• consume_fasta --> consume_seqfile

  standage

  committed
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Commits on Nov 29, 2016

• Merge branch 'master' into fix_sweep2

  standage

  authored
  8e8be10

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Commits on Nov 28, 2016

• Fixed import, shebang typo

  standage

  committed
  45c962e

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Commits on Nov 18, 2016

• Fixes suggested by @ctb

  standage

  committed
  3c8a294

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Commits on Nov 17, 2016

• Switch to broken paired reader

  standage

  committed
  e5d2401

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• Use utils.write_record

  standage

  committed
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Commits on Nov 14, 2016

• Convenience flag

  standage

  committed
  c560805

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• Write Fastq records when quality is present

  standage

  committed
  e4e650d

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Commits on Nov 2, 2016

• Merge in master and remove compiler warnings from kwnames in khmer.cc

  camillescott

  committed
  4657245

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Commits on Nov 1, 2016

• Basic junctioncounting assembler and script working

  camillescott

  committed
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Commits on Oct 31, 2016

• Various tools for assembling directly from the graph, including using labels to track paths. (#1412)

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  camillescott

  authored and

  ctb

  committed
  ab262a6

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Commits on Oct 29, 2016

• update sweep script

  ctb

  committed
  4fe23e9

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Commits on Oct 16, 2016

• start convert to junction assembler

  camillescott

  committed
  44d792c

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• mofidy output of assembly script

  camillescott

  committed
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Commits on Aug 5, 2016

• Add tracking info assembly script; add specialized assembler traverser

  camillescott

  committed
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Commits on Jul 18, 2016

• fix @ljcohen short sequence issue?

  ctb

  committed
  fd9d82c

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• update extract-unassembled-reads* sandbox scripts for python3

  ctb

  committed
  aa7e7b6

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Commits on Jun 27, 2016

• Merge branch 'master' of github.com:dib-lab/khmer into feature/pathlink

  ctb

  committed
  6e9650e

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• address @standage comments

  ctb

  committed
  36584ea

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• added test for extract-compact-dbg.py

  ctb

  committed
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Commits on Jun 15, 2016

• add extract-unassembled-reads*py

  ctb

  committed
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Commits on Jun 10, 2016

• fix print function py2 issue

  ctb

  committed
  5e08729

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• basic stuff is working

  ctb

  committed
  fcf61c0

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Commits on Jun 9, 2016

• a first attempt at streaming assembly

  ctb

  committed
  3740422

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• cleanup & commenting

  ctb

  committed
  a432f0e

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• track labels in collapsed linear paths

  ctb

  committed
  b1e99ed

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• basic compilation works

  ctb

  committed
  8d77afe

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Commits on May 15, 2016

• refactor find_high_degree_nodes to return a new HashSet object

  ctb

  committed
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Commits on May 14, 2016

• fix extract bug, flag no high-degree nodes

  ctb

  committed
  2ed8923

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• refactored linear traversal code a bit, added a test or two

  ctb

  committed
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