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use directsketch to download genomes

Status: Open.

#315 In dib-lab/genome-grist;

· ctb opened on Nov 13, 2024

modernize genome-grist :)

Status: Open.

#312 In dib-lab/genome-grist;

· ctb opened on Sep 18, 2024

a passing thought on contaminated references

Status: Open.

#311 In dib-lab/genome-grist;

· clb21565 opened on Jul 29, 2024

Bumping bcftools to 1.18 in bcftools.yml?

Status: Open.

#301 In dib-lab/genome-grist;

· scunnac opened on Oct 18, 2023

revisit read naming - /1 and /2

Status: Open.

#297 In dib-lab/genome-grist;

· ctb opened on Aug 27, 2023

switch to using get-some-ncbi-genomes

Status: Open.

#295 In dib-lab/genome-grist;

· ctb opened on Jul 31, 2023

raw read processing: /1, /2 not always added/specified properly

Status: Open.

#294 In dib-lab/genome-grist;

· bluegenes opened on Jul 12, 2023

fix documentation site to be better/nicer

Status: Open.

#293 In dib-lab/genome-grist;

· ctb opened on Jul 8, 2023

prioritize genomes found in previous samples when running genome grist

Status: Open.

#291 In dib-lab/genome-grist;

· clb21565 opened on Jun 29, 2023

Insert a list of accessions into the samples: section of the config.yml file!

code

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#284 In dib-lab/genome-grist;

· ccbaumler opened on Jun 10, 2023

Using --cluster parameter to run jobs

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#283 In dib-lab/genome-grist;

· ccbaumler opened on Jun 10, 2023

Problem with grist output

Status: Open.

#278 In dib-lab/genome-grist;

· marsfro opened on Apr 19, 2023