Update to BUSCO v5 #223

camillescott · 2021-02-04T03:03:14Z

Adds new BUSCOTableParser class using ope.io.base.ChunkParser capable of parsing both 4.1.1 and 5.0.0 formats
Updates the BUSCO_to_GFF3 converter for multi-version support
Update the busco-to-gff3 subcommand
Update the test data

…ates; update busco-to-gff3 and converters for v5 format

…ed when multi busco groups are used

camillescott added 7 commits February 3, 2021 19:00

BUSCO v5: add a BUSCOTableParser that properly splits out the coordin…

56f7076

…ates; update busco-to-gff3 and converters for v5 format

Use set() to fix strange bug where multiple HMMER targets are generat…

9bdd7b9

…ed when multi busco groups are used

Pass --global-evalue to BUSCO

221a1df

Handle no BUSCO hits in table parser

f0ea818

Update test data and tests with data that works for BUSCO v5

f907867

Update busco wrapper test for smaller test data

2bac59a

Merge branch 'v2_staging' into test_busco_v5

7ce1650

camillescott merged commit 27706a9 into v2_staging Feb 10, 2021

camillescott deleted the test_busco_v5 branch February 10, 2021 06:52

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