Non root install #6
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| First, check out the source repository and grab the (...large) initial data | ||
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| echo "export PATH=${PATH}:~/bin" >> ~/.bashrc |
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and run it right here as well
export PATH=${PATH}:~/bin
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…norm into non-root-install
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*Add virtualenv for non-root easyinstall
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| sudo su | ||
| If you are running on RackSpace, we will need to add extra space for data by formating and mounting a drive. | ||
| Formating/Mounting Drive:: |
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You're using a '15 GB I/O v1' flavor Rackspace cloud server
*Add virtualenv for non-root easyinstall
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| @@ -6,41 +6,41 @@ cd /mnt | |||
| curl -O ftp://selab.janelia.org/pub/software/hmmer3/3.1b1/hmmer-3.1b1.tar.gz | |||
| tar xzf hmmer-3.1b1.tar.gz | |||
| cd hmmer-3.1b1/ | |||
| ./configure --prefix=/usr && make && make install | |||
| ./configure --prefix=${HOME} && make && make install | |||
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* into apt-get lines Conflicts: pipeline/pipeline-notes.rst
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| cp aragorn /usr/local/bin | ||
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| cd /mnt | ||
| cd ${HOME}/bin |
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source downloads should go into ${HOME}/src/${NAME}
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@mr-c
should be cd ${HOME}/src/prodigal?
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| easy_install -U setuptools | ||
| pip install khmer==1.1 | ||
| echo 'export PATH=${PATH}:${HOME}/bin' >> ${HOME}/.bashrc | ||
| source ${HOME}/.bashrc |
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@mr-c when I execute this source, the virtualenv is no longer activated. Is this a problem, so long as I repeat the step on line 93 (non root)? If I can grant non-root the right permissions I should be able to move the khmer out of root
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The simplest thing to do would be to move lines 82-83 prior to lines 76
| Then we want to set the user directory to the home path, and grant permissions to the user:: | ||
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| HOME=/home/<your_user_name> | ||
| chown -R <your_user_name> ${HOME} |
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I had to use the recursive flag so that this would apply to all subdirectories.
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| Next, we are going to set the instance up with many of the software | ||
| packages we will need:: | ||
| We will also want to link /mnt/bin directory to our home/bin directory:: | ||
| sudo ln -s /mnt/bin ${HOME}/bin |
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When EC2 is available again, please test this out. Where does /mnt/bin/ come from?
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PR so @mr-c can follow along