Computational Biologist & Bioinformatics Software Engineer
PhD in Plant Protection and Integrated Pest Management at Colorado State University
Specializing in high-performance genomics tooling (Rust & Python), transcriptomics, and pathogen diagnostics.
- 🦀 Building blazingly fast bioinformatics tools and CLI utilities in Rust.
- 🐍 Modernizing genomic pipelines and algorithm workflows in Python 3.
- 🔬 Characterizing disease resistance pathways, plant-pathogen interactions, and alternative splicing mechanisms.
- 🤝 Looking to collaborate on: Genomics, transcriptomics pipelines, and high-performance sequence analysis algorithms.
| Project | Language | Description | Key Topics |
|---|---|---|---|
| primersearch-rs | Rust |
High-performance in-silico PCR and primer search engine with multi-threaded EMBOSS compatibility. | in-silico-pcr, rust, genomics, cli |
| annotale-rs | Rust |
Ultra-fast genomic annotation and TALE target analysis toolkit powered by profile HMMs and rayon. |
tale, annotation, hmm, bioinformatics |
| Uniqprimer-Py3 | Python |
Modernized Python 3 toolkit for designing specific, unique primer pairs using MUMmer & Primer3. | primer-design, pcr, amplicon-sequencing |
| Pathogen_ID | Python |
High-throughput metagenomic diagnostic pipeline for multi-kingdom plant pathogen detection from ONT data. | metagenomics, nanopore-sequencing, diagnostics |
| spliceimpact-rs | Rust |
Fast toolkit evaluating the functional consequences of alternative RNA splicing on reading frames & protein domains. | alternative-splicing, transcriptomics, rna-seq |
