chore: Upgrade go.mod dependencies, fix jose v2 vulnerability, upgrad…

…e jemalloc (#9158)

A general upgrade to latest (compatible) versions of
multiple dependencies. Jose v2 also triggers vulnerability issues in our
containers, so replaced that with v4 everywhere.

Makefile

@@ -61,7 +61,7 @@ install:
 
 .PHONY: install_oss oss_install
 install_oss oss_install:
-	$(MAKE) BUILD_TAGS=oss install
+	$(MAKE) BUILD_TAGS=oss,jemalloc install
 
 .PHONY: uninstall
 uninstall:

dgraph/Makefile

@@ -64,7 +64,7 @@ endif
 
 # jemalloc stuff
 HAS_JEMALLOC = $(shell test -f /usr/local/lib/libjemalloc.a && echo "jemalloc")
-JEMALLOC_URL = "https://github.com/jemalloc/jemalloc/releases/download/5.2.1/jemalloc-5.2.1.tar.bz2"
+JEMALLOC_URL = "https://github.com/jemalloc/jemalloc/releases/download/5.3.0/jemalloc-5.3.0.tar.bz2"
 
 # go install variables
 HAS_SHA256SUM = $(shell which sha256sum)
@@ -107,7 +107,7 @@ jemalloc:
 		echo "Downloading jemalloc" ; \
 		curl -f -s -L ${JEMALLOC_URL} -o jemalloc.tar.bz2 ; \
 		tar xjf ./jemalloc.tar.bz2 ; \
-		cd jemalloc-5.2.1 ; \
+		cd jemalloc-5.3.0 ; \
 		./configure --with-jemalloc-prefix='je_' --with-malloc-conf='background_thread:true,metadata_thp:auto'; \
 		make ; \
 		if [ "$(USER_ID)" = "0" ]; then \
@@ -117,4 +117,3 @@ jemalloc:
 			sudo make install ; \
 		fi \
 	fi
-

go.mod

@@ -9,7 +9,7 @@ require (
 	github.com/HdrHistogram/hdrhistogram-go v1.1.2
 	github.com/IBM/sarama v1.43.3
 	github.com/Masterminds/semver/v3 v3.3.0
-	github.com/bits-and-blooms/bitset v1.14.2
+	github.com/bits-and-blooms/bitset v1.14.3
 	github.com/blevesearch/bleve/v2 v2.4.2
 	github.com/dgraph-io/badger/v4 v4.2.0
 	github.com/dgraph-io/dgo/v240 v240.0.0
@@ -20,10 +20,11 @@ require (
 	github.com/dgraph-io/simdjson-go v0.3.0
 	github.com/dgryski/go-farm v0.0.0-20200201041132-a6ae2369ad13
 	github.com/dgryski/go-groupvarint v0.0.0-20230630160417-2bfb7969fb3c
-	github.com/docker/docker v27.2.0+incompatible
+	github.com/docker/docker v27.2.1+incompatible
 	github.com/docker/go-connections v0.5.0
 	github.com/dustin/go-humanize v1.0.1
 	github.com/getsentry/sentry-go v0.28.1
+	github.com/go-jose/go-jose/v4 v4.0.4
 	github.com/go-sql-driver/mysql v1.8.1
 	github.com/gogo/protobuf v1.3.2
 	github.com/golang-jwt/jwt/v5 v5.2.1
@@ -42,7 +43,7 @@ require (
 	github.com/paulmach/go.geojson v1.5.0
 	github.com/pkg/errors v0.9.1
 	github.com/pkg/profile v1.7.0
-	github.com/prometheus/client_golang v1.20.2
+	github.com/prometheus/client_golang v1.20.3
 	github.com/soheilhy/cmux v0.1.5
 	github.com/spf13/cast v1.3.1
 	github.com/spf13/cobra v1.8.1
@@ -55,17 +56,16 @@ require (
 	go.etcd.io/etcd/raft/v3 v3.5.15
 	go.opencensus.io v0.24.0
 	go.uber.org/zap v1.27.0
-	golang.org/x/crypto v0.26.0
-	golang.org/x/exp v0.0.0-20240823005443-9b4947da3948
+	golang.org/x/crypto v0.27.0
+	golang.org/x/exp v0.0.0-20240904232852-e7e105dedf7e
 	golang.org/x/mod v0.21.0
-	golang.org/x/net v0.28.0
+	golang.org/x/net v0.29.0
 	golang.org/x/sync v0.8.0
-	golang.org/x/sys v0.24.0
-	golang.org/x/term v0.23.0
+	golang.org/x/sys v0.25.0
+	golang.org/x/term v0.24.0
 	golang.org/x/text v0.18.0
 	golang.org/x/tools v0.24.0
 	google.golang.org/grpc v1.66.0
-	gopkg.in/square/go-jose.v2 v2.6.0
 	gopkg.in/yaml.v2 v2.4.0
 )
 
@@ -90,17 +90,16 @@ require (
 	github.com/eapache/go-resiliency v1.7.0 // indirect
 	github.com/eapache/go-xerial-snappy v0.0.0-20230731223053-c322873962e3 // indirect
 	github.com/eapache/queue v1.1.0 // indirect
-	github.com/felixge/fgprof v0.9.4 // indirect
+	github.com/felixge/fgprof v0.9.5 // indirect
 	github.com/felixge/httpsnoop v1.0.4 // indirect
 	github.com/fsnotify/fsnotify v1.7.0 // indirect
-	github.com/go-jose/go-jose/v4 v4.0.4 // indirect
 	github.com/go-kit/log v0.2.1 // indirect
 	github.com/go-logfmt/logfmt v0.6.0 // indirect
 	github.com/go-logr/logr v1.4.2 // indirect
 	github.com/go-logr/stdr v1.2.2 // indirect
 	github.com/golang/groupcache v0.0.0-20210331224755-41bb18bfe9da // indirect
 	github.com/google/flatbuffers v24.3.25+incompatible // indirect
-	github.com/google/pprof v0.0.0-20240727154555-813a5fbdbec8 // indirect
+	github.com/google/pprof v0.0.0-20240903155634-a8630aee4ab9 // indirect
 	github.com/hashicorp/errwrap v1.1.0 // indirect
 	github.com/hashicorp/go-cleanhttp v0.5.2 // indirect
 	github.com/hashicorp/go-multierror v1.1.1 // indirect
@@ -131,36 +130,38 @@ require (
 	github.com/munnerz/goautoneg v0.0.0-20191010083416-a7dc8b61c822 // indirect
 	github.com/opencontainers/go-digest v1.0.0 // indirect
 	github.com/opencontainers/image-spec v1.1.0 // indirect
-	github.com/pelletier/go-toml v1.2.0 // indirect
-	github.com/philhofer/fwd v1.1.3-0.20240613040359-cdc6af6b8762 // indirect
+	github.com/pelletier/go-toml v1.9.5 // indirect
+	github.com/philhofer/fwd v1.1.3-0.20240612014219-fbbf4953d986 // indirect
 	github.com/pierrec/lz4/v4 v4.1.21 // indirect
 	github.com/pmezard/go-difflib v1.0.1-0.20181226105442-5d4384ee4fb2 // indirect
 	github.com/prometheus/client_model v0.6.1 // indirect
-	github.com/prometheus/common v0.55.0 // indirect
+	github.com/prometheus/common v0.59.1 // indirect
 	github.com/prometheus/procfs v0.15.1 // indirect
 	github.com/prometheus/statsd_exporter v0.27.1 // indirect
 	github.com/rcrowley/go-metrics v0.0.0-20201227073835-cf1acfcdf475 // indirect
+	github.com/rogpeppe/go-internal v1.12.0 // indirect
 	github.com/ryanuber/go-glob v1.0.0 // indirect
 	github.com/spf13/afero v1.11.0 // indirect
-	github.com/spf13/jwalterweatherman v1.0.0 // indirect
+	github.com/spf13/jwalterweatherman v1.1.0 // indirect
 	github.com/subosito/gotenv v1.6.0 // indirect
-	github.com/tinylib/msgp v1.2.0 // indirect
-	github.com/uber/jaeger-client-go v2.25.0+incompatible // indirect
+	github.com/tinylib/msgp v1.2.1 // indirect
+	github.com/uber/jaeger-client-go v2.28.0+incompatible // indirect
 	github.com/viterin/partial v1.1.0 // indirect
 	github.com/xdg/stringprep v1.0.3 // indirect
-	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.53.0 // indirect
-	go.opentelemetry.io/otel v1.28.0 // indirect
-	go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.28.0 // indirect
-	go.opentelemetry.io/otel/metric v1.28.0 // indirect
-	go.opentelemetry.io/otel/sdk v1.28.0 // indirect
-	go.opentelemetry.io/otel/trace v1.28.0 // indirect
+	go.opentelemetry.io/contrib/instrumentation/net/http/otelhttp v0.54.0 // indirect
+	go.opentelemetry.io/otel v1.29.0 // indirect
+	go.opentelemetry.io/otel/exporters/otlp/otlptrace/otlptracehttp v1.29.0 // indirect
+	go.opentelemetry.io/otel/metric v1.29.0 // indirect
+	go.opentelemetry.io/otel/sdk v1.29.0 // indirect
+	go.opentelemetry.io/otel/trace v1.29.0 // indirect
 	go.uber.org/multierr v1.11.0 // indirect
 	golang.org/x/time v0.6.0 // indirect
-	google.golang.org/api v0.194.0 // indirect
-	google.golang.org/genproto/googleapis/rpc v0.0.0-20240827150818-7e3bb234dfed // indirect
+	google.golang.org/api v0.196.0 // indirect
+	google.golang.org/genproto/googleapis/api v0.0.0-20240903143218-8af14fe29dc1 // indirect
+	google.golang.org/genproto/googleapis/rpc v0.0.0-20240903143218-8af14fe29dc1 // indirect
 	google.golang.org/protobuf v1.34.2 // indirect
-	gopkg.in/DataDog/dd-trace-go.v1 v1.67.0 // indirect
+	gopkg.in/DataDog/dd-trace-go.v1 v1.67.1 // indirect
 	gopkg.in/ini.v1 v1.67.0 // indirect
 	gopkg.in/yaml.v3 v3.0.1 // indirect
-	gotest.tools/v3 v3.5.0 // indirect
+	gotest.tools/v3 v3.5.1 // indirect
 )