update to release 88

dglemos · Mar 13, 2017 · ddd314b · ddd314b
1 parent 8ea130a
commit ddd314b
Showing 1 changed file with 25 additions and 25 deletions.
diff --git a/plugin_config.txt b/plugin_config.txt
@@ -16,7 +16,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "dbNSFP provides pathogenicity predictions for missense variants from various algorithms",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/dbNSFP.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/dbNSFP.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -239,7 +239,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "Combined Annotation Dependent Depletion (CADD) is a tool for scoring the deleteriousness of single nucleotide variants and insertion/deletion variants in the human genome. CADD integrates multiple annotations into one metric by contrasting variants that survived natural selection with simulated mutations.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/CADD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/CADD.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -261,7 +261,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "FATHMM-MKL predicts functional consequences of variants, both coding and non-coding.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/FATHMM_MKL.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/FATHMM_MKL.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -315,7 +315,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/Carol.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Carol.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -333,7 +333,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/Condel.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Condel.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -381,7 +381,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/LoFtool.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/LoFtool.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -399,7 +399,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/ExACpLI.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ExACpLI.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -422,7 +422,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Splicing predictions",
       "helptip" => "Retrieves data for splicing variants from a tabix-indexed dbscSNV file",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/dbscSNV.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/dbscSNV.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -441,7 +441,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/GeneSplicer.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GeneSplicer.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -461,7 +461,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/MaxEntScan.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/MaxEntScan.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -483,7 +483,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/Blosum62.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Blosum62.pm",
     },
 
     # Conservation
@@ -505,7 +505,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/Conservation.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Conservation.pm",
       "params" => [
         "@*"
       ],
@@ -543,7 +543,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/CSN.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/CSN.pm",
     },
 
     # HGVSshift
@@ -554,7 +554,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/HGVSshift.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/HGVSshift.pm",
     },
 
 
@@ -568,7 +568,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports allele frequencies from the Exome Aggregation Consortium",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/ExAC.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ExAC.pm",
       "section" => "Frequency data",
       "requires_data" => 1,
       "species" => [
@@ -590,7 +590,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Determines where in the secondary structure of a miRNA a variant falls",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/miRNA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/miRNA.pm",
     },
 
 
@@ -603,7 +603,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "helptip" => "Change the distance to transcript (default is 5000bp) for which VEP assigns upstream and downstream consequences",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/UpDownDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/UpDownDistance.pm",
       "params" => [
         "@*"
       ],
@@ -624,7 +624,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds the nearest gene to non-genic variants",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/NearestGene.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/NearestGene.pm",
     },
 
     # LD
@@ -634,7 +634,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds variants in linkage disequilibrium with any overlapping existing variants from the Ensembl variation databases",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/LD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/LD.pm",
       "section" => "Variant data",
       "params" => [
         "@*"
@@ -690,7 +690,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports existing variants that fall in the same codon",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/SameCodon.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/SameCodon.pm",
       "section" => "Variant data",
     },
 
@@ -701,7 +701,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Retrieves Gene Ontology terms associated with transcripts/translations via the Ensembl API",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/GO.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GO.pm",
       "section" => "Gene data",
     },
 
@@ -712,7 +712,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports data from the Gene Expression Atlas",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/GXA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/GXA.pm",
       "section" => "Gene data",
     },
 
@@ -723,7 +723,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Predicts the downstream effects of a frameshift variant on the protein sequence of a transcript",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/Downstream.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/Downstream.pm",
     },
 
     # ProteinSeqs
@@ -733,7 +733,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Prints out the reference and mutated protein sequences of any proteins found with non-synonymous mutations",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/ProteinSeqs.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/ProteinSeqs.pm",
     },
 
     # TSSDistance
@@ -743,7 +743,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Calculates the distance from the transcription start site for upstream variants   ",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/87/TSSDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/88/TSSDistance.pm",
     },
   ]
 };