update plugin URLs

dglemos · Aug 8, 2017 · d69f9d3 · d69f9d3
1 parent 2996ebd
commit d69f9d3
Showing 1 changed file with 27 additions and 27 deletions.
diff --git a/plugin_config.txt b/plugin_config.txt
@@ -16,7 +16,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "dbNSFP provides pathogenicity predictions for missense variants from various algorithms",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/dbNSFP.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/dbNSFP.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -250,7 +250,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "Combined Annotation Dependent Depletion (CADD) is a tool for scoring the deleteriousness of single nucleotide variants and insertion/deletion variants in the human genome. CADD integrates multiple annotations into one metric by contrasting variants that survived natural selection with simulated mutations.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/CADD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/CADD.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -272,7 +272,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "FATHMM-MKL predicts functional consequences of variants, both coding and non-coding.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/FATHMM_MKL.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/FATHMM_MKL.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -326,7 +326,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Carol.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Carol.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -344,7 +344,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Condel.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Condel.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -375,7 +375,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/PolyPhen_SIFT.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/PolyPhen_SIFT.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -409,7 +409,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/LoFtool.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/LoFtool.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -427,7 +427,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ExACpLI.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/ExACpLI.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -468,7 +468,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Splicing predictions",
       "helptip" => "Retrieves data for splicing variants from a tabix-indexed dbscSNV file",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/dbscSNV.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/dbscSNV.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -487,7 +487,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GeneSplicer.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/GeneSplicer.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -507,7 +507,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/MaxEntScan.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/MaxEntScan.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -525,7 +525,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/SpliceRegion.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/SpliceRegion.pm",
     },
 
 
@@ -540,7 +540,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Blosum62.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Blosum62.pm",
     },
 
     # Conservation
@@ -562,7 +562,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Conservation.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Conservation.pm",
       "params" => [
         "@*"
       ],
@@ -600,7 +600,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/CSN.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/CSN.pm",
     },
 
     # HGVSshift
@@ -611,7 +611,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/HGVSshift.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/HGVSshift.pm",
     },
 
 
@@ -625,7 +625,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports allele frequencies from the Exome Aggregation Consortium",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ExAC.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/ExAC.pm",
       "section" => "Frequency data",
       "requires_data" => 1,
       "species" => [
@@ -647,7 +647,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Determines where in the secondary structure of a miRNA a variant falls",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/miRNA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/miRNA.pm",
     },
 
 
@@ -660,7 +660,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "helptip" => "Change the distance to transcript (default is 5000bp) for which VEP assigns upstream and downstream consequences",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/UpDownDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/UpDownDistance.pm",
       "params" => [
         "@*"
       ],
@@ -681,7 +681,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds the nearest gene to non-genic variants",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/NearestGene.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/NearestGene.pm",
     },
 
     # LD
@@ -691,7 +691,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds variants in linkage disequilibrium with any overlapping existing variants from the Ensembl variation databases",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/LD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/LD.pm",
       "section" => "Variant data",
       "params" => [
         "@*"
@@ -747,7 +747,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports existing variants that fall in the same codon",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/SameCodon.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/SameCodon.pm",
       "section" => "Variant data",
     },
 
@@ -758,7 +758,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Retrieves Gene Ontology terms associated with transcripts/translations via the Ensembl API",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GO.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/GO.pm",
       "section" => "Gene data",
     },
 
@@ -769,7 +769,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports data from the Gene Expression Atlas",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/GXA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/GXA.pm",
       "section" => "Gene data",
     },
 
@@ -780,7 +780,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Predicts the downstream effects of a frameshift variant on the protein sequence of a transcript",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/Downstream.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/Downstream.pm",
     },
 
     # ProteinSeqs
@@ -790,7 +790,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Prints out the reference and mutated protein sequences of any proteins found with non-synonymous mutations",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/ProteinSeqs.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/ProteinSeqs.pm",
     },
 
     # TSSDistance
@@ -800,7 +800,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Calculates the distance from the transcription start site for upstream variants   ",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/89/TSSDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/90/TSSDistance.pm",
     },
   ]
 };