plugin config updates for 92

dglemos · Jan 22, 2018 · 8a63feb · 8a63feb
1 parent 81e79f1
commit 8a63feb
Showing 1 changed file with 30 additions and 30 deletions.
diff --git a/plugin_config.txt b/plugin_config.txt
@@ -16,7 +16,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "dbNSFP provides pathogenicity predictions for missense variants from various algorithms",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/dbNSFP.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/dbNSFP.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -301,7 +301,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "Combined Annotation Dependent Depletion (CADD) is a tool for scoring the deleteriousness of single nucleotide variants and insertion/deletion variants in the human genome. CADD integrates multiple annotations into one metric by contrasting variants that survived natural selection with simulated mutations.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/CADD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/CADD.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -323,7 +323,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
       "helptip" => "FATHMM-MKL predicts functional consequences of variants, both coding and non-coding.",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/FATHMM_MKL.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/FATHMM_MKL.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -377,7 +377,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/Carol.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/Carol.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -395,7 +395,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/Condel.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/Condel.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -426,7 +426,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/PolyPhen_SIFT.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/PolyPhen_SIFT.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -460,7 +460,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/LoFtool.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/LoFtool.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -478,7 +478,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/ExACpLI.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/ExACpLI.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -496,7 +496,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/MPC.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/MPC.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -514,7 +514,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/MTR.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/MTR.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -532,7 +532,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Pathogenicity predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/REVEL.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/REVEL.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -555,7 +555,7 @@ my $VEP_PLUGIN_CONFIG = {
       "enabled" => 0,
       "section" => "Splicing predictions",
       "helptip" => "Retrieves data for splicing variants from a tabix-indexed dbscSNV file",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/dbscSNV.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/dbscSNV.pm",
       "requires_data" => 1,
       "requires_install" => 1,
       "params"  => [
@@ -574,7 +574,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/GeneSplicer.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/GeneSplicer.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -594,7 +594,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/MaxEntScan.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/MaxEntScan.pm",
       "requires_install" => 1,
       "species" => [
         "homo_sapiens"
@@ -612,7 +612,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Splicing predictions",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/SpliceRegion.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/SpliceRegion.pm",
     },
 
 
@@ -627,7 +627,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/Blosum62.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/Blosum62.pm",
     },
 
     # Conservation
@@ -649,7 +649,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/Conservation.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/Conservation.pm",
       "params" => [
         "@*"
       ],
@@ -685,7 +685,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Conservation",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/AncestralAllele.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/AncestralAllele.pm",
       "requires_data" => 1,
       "species" => [
         "homo_sapiens"
@@ -706,7 +706,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "section" => "Identifiers",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/CSN.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/CSN.pm",
     },
 
 
@@ -720,7 +720,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports allele frequencies from the Exome Aggregation Consortium",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/ExAC.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/ExAC.pm",
       "section" => "Frequency data",
       "requires_data" => 1,
       "species" => [
@@ -742,7 +742,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Determines where in the secondary structure of a miRNA a variant falls",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/miRNA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/miRNA.pm",
     },
 
 
@@ -755,7 +755,7 @@ my $VEP_PLUGIN_CONFIG = {
       "available" => 0,
       "enabled" => 0,
       "helptip" => "Change the distance to transcript (default is 5000bp) for which VEP assigns upstream and downstream consequences",
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/UpDownDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/UpDownDistance.pm",
       "params" => [
         "@*"
       ],
@@ -776,7 +776,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds the nearest gene to non-genic variants",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/NearestGene.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/NearestGene.pm",
     },
 
     # LD
@@ -786,7 +786,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Finds variants in linkage disequilibrium with any overlapping existing variants from the Ensembl variation databases",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/LD.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/LD.pm",
       "section" => "Variant data",
       "params" => [
         "@*"
@@ -842,7 +842,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports existing variants that fall in the same codon",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/SameCodon.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/SameCodon.pm",
       "section" => "Variant data",
     },
 
@@ -853,7 +853,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Retrieves Gene Ontology terms associated with transcripts/translations via the Ensembl API",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/GO.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/GO.pm",
       "section" => "Gene data",
     },
 
@@ -864,7 +864,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Reports data from the Gene Expression Atlas",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/GXA.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/GXA.pm",
       "section" => "Gene data",
     },
 
@@ -875,7 +875,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Predicts the downstream effects of a frameshift variant on the protein sequence of a transcript",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/Downstream.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/Downstream.pm",
     },
 
     # ProteinSeqs
@@ -885,7 +885,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Prints out the reference and mutated protein sequences of any proteins found with non-synonymous mutations",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/ProteinSeqs.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/ProteinSeqs.pm",
     },
 
     # TSSDistance
@@ -895,7 +895,7 @@ my $VEP_PLUGIN_CONFIG = {
       "helptip" => "Calculates the distance from the transcription start site for upstream variants   ",
       "available" => 0,
       "enabled" => 0,
-      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/91/TSSDistance.pm",
+      "plugin_url" => "https://raw.githubusercontent.com/Ensembl/VEP_plugins/release/92/TSSDistance.pm",
     },
   ]
 };